Browse Element(s) Details


Os.17156.1.S1_at

Description gb:NM_196947.1
DB_XREF= gi:37535253
TID=Os.17156.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17156 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNBa0079L16.5), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g331302/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33080OsAffx.20258.1.S1_at10/1110+17002072..17005527Leucine Rich Repeat family protein
LOC_Os10g33110Os.46543.2.S1_at5/1110+17017221..17020331Leucine Rich Repeat family protein
LOC_Os10g33130Os.17156.1.S1_at2/1110+17028870..17032231Leucine Rich Repeat family protein, expressed
LOC_Os10g33140Os.5622.2.S1_x_at11/1110+17035636..17037423Leucine Rich Repeat family protein, expressed
LOC_Os10g33140Os.5622.1.S1_at11/1110+17035636..17037423Leucine Rich Repeat family protein, expressed
LOC_Os10g33140Os.46812.2.S1_x_at1/1110+17035636..17037423Leucine Rich Repeat family protein, expressed
LOC_Os10g33170Os.17250.1.S1_at11/1110+17045068..17049651POT family protein, expressed
LOC_Os10g33170Os.17250.1.S1_x_at11/1110+17045068..17049651POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17156.1.S1_at--55--3131Chr10:17029483..17029507 (25 bp)
AATTTGAATATCTTGGAGTCCCTTG
LOC_Os10g33130
Os.17156.1.S1_at--587--8031Chr10:17029469..17029493 (25 bp)
GGAGTCCCTTGACTTGTCATGGAAT
LOC_Os10g33130
Os.17156.1.S1_at--1146--273Chr10:17028807..17028831 (25 bp)
ATAGAGTACTATCCTAAGCTTGCCC
NONE
Os.17156.1.S1_at--543--10671Chr10:17028788..17028812 (25 bp)
TTGCCCCTGGCGTTAATCTAACAAT
NONE
Os.17156.1.S1_at--924--1591Chr10:17028756..17028780 (25 bp)
AGCTGTGAAATTCCAACCGTTCCCG
NONE
Os.17156.1.S1_at--609--3251Chr10:17028725..17028749 (25 bp)
CAACGGGTGACCTGGAGTCGCTCCA
NONE
Os.17156.1.S1_at--340--4091Chr10:17028699..17028723 (25 bp)
CGAGCCATGGCGATCTTGCCAGTAA
NONE
Os.17156.1.S1_at--1095--4671Chr10:17028473..17028497 (25 bp)
GCGGTCTCTTTTGCCGTTGGCGGCA
NONE
Os.17156.1.S1_at--777--4691Chr10:17028454..17028478 (25 bp)
GCGGCATAGCTCGAGCGCATGGAAT
NONE
Os.17156.1.S1_at--1015--7211Chr10:17028425..17028449 (25 bp)
GTCGAGCTTGTCGTCGGCTTGGTTT
NONE
Os.17156.1.S1_at--337--1371Chr10:17028366..17028390 (25 bp)
AGAGCTACTATTGCGTGGCTCGGCA
NONE
Target Sequence 
AATTTGAATATCTTGGAGTCCCTTGACTTGTCATGGAATGAGCTTTCAGTAATAGAGTACTATCCTAAGCTTGCCCCTGG
CGTTAATCTAACAATGCATCTTAGCTGTGAAATTCCAACCGTTCCCGACGGCGCAACGGGTGACCTGGAGTCGCTCCAGC
GAGCCATGGCGATCTTGCCAGTAAAAGAGAGGCCGGTGAAAGCTAGGGTTTTCGCCGCGTTTGCGTCCGGCGACGGCGAT
GGAGGAGGCGAAGCCCTGGGCGGCTCTCGGGCGGAGGTAGACGGGGCGGAGGCGGTCTCTTTTGCCGTTGGCGGCATAGC
TCGAGCGCATGGAATGGAGGTCGAGCTTGTCGTCGGCTTGGTTTGTTGGCGCGGCAAAGCTTGGGATGAAGCAGAGGCAG
AGCTACTATTGCGTGGCTCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis