Browse Element(s) Details


Os.5622.2.S1_x_at

Description gb:NM_196948.1
DB_XREF= gi:37535255
TID=Os.5622.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5622 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNBa0079L16.6), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3314011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33110Os.46543.2.S1_at5/1110+17017221..17020331Leucine Rich Repeat family protein
LOC_Os10g33130Os.17156.1.S1_at2/1110+17028870..17032231Leucine Rich Repeat family protein, expressed
LOC_Os10g33140Os.5622.2.S1_x_at11/1110+17035636..17037423Leucine Rich Repeat family protein, expressed
LOC_Os10g33140Os.5622.1.S1_at11/1110+17035636..17037423Leucine Rich Repeat family protein, expressed
LOC_Os10g33140Os.46812.2.S1_x_at1/1110+17035636..17037423Leucine Rich Repeat family protein, expressed
LOC_Os10g33170Os.17250.1.S1_at11/1110+17045068..17049651POT family protein, expressed
LOC_Os10g33170Os.17250.1.S1_x_at11/1110+17045068..17049651POT family protein, expressed
LOC_Os10g33190Os.31845.2.S1_x_at1/1110+17060331..17066649expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5622.2.S1_x_at--1065--8991Chr10:17037099..17037123 (25 bp)
TGAAGTAGACTTCTCCAGCAGGCCG
LOC_Os10g33140
Os.5622.2.S1_x_at--975--951Chr10:17037034..17037058 (25 bp)
AGTACAACGTCCTGAACGGCAACTC
LOC_Os10g33140
Os.5622.2.S1_x_at--537--10271Chr10:17036983..17037007 (25 bp)
TTTGCAGGTTGCTTTCTCTCCAGAT
LOC_Os10g33140
Os.5622.2.S1_x_at--80--7071Chr10:17036929..17036953 (25 bp)
GTAAGCTGCCTGACTGCTGGTGGAA
LOC_Os10g33140
Os.5622.2.S1_x_at--1098--4711Chr10:17036914..17036938 (25 bp)
GCTGGTGGAATCTGCAGAGCCTGCA
LOC_Os10g33140
Os.5622.2.S1_x_at--146--3251Chr10:17036781..17036895 (25 bp)
CAACCGCTTCTCAGCGCTAAAGGGA
LOC_Os10g33140
Os.5622.2.S1_x_at--895--4411Chr10:17036755..17036779 (25 bp)
GCCAGACGCTGGTCACTTTAGATAT
LOC_Os10g33140
Os.5622.2.S1_x_at--725--2231Chr10:17036722..17036746 (25 bp)
ACAATTTCTTTGGTGGCATTCCTCC
LOC_Os10g33140
Os.5622.2.S1_x_at--708--3251Chr10:17036400..17036670 (25 bp)
CAACTTCACCGGTAACTCATTGTCT
LOC_Os10g33140
Os.5622.2.S1_x_at--89--51Chr10:17036382..17036406 (25 bp)
ATTGTCTGAATGCATCCCCGATGAG
LOC_Os10g33140
Os.5622.2.S1_x_at--887--871Chr10:17036343..17036367 (25 bp)
AGGCCTTCGATTTCTGAACTTGTCA
LOC_Os10g33140
Target Sequence 
TGAAGTAGACTTCTCCAGCAGGCCGGCTCGGAGGCTATACGACGGCGGCGCAGTCATGCCGGAGAAGTACAACGTCCTGA
ACGGCAACTCCTCCAACAGCAGCTCCGGCTCGGCCTTTTGCAGGTTGCTTTCTCTCCAGATCCTGGACCTGTCAAACAAC
AAGCTCACCGGTAAGCTGCCTGACTGCTGGTGGAATCTGCAGAGCCTGCAGTTCATGGACCTCTCCCACAACCGCTTCTC
AGCGCTAAAGGGATGCCAGACGCTGGTCACTTTAGATATTGGGAACAACAATTTCTTTGGTGGCATTCCTCCTTGGATTG
GGAAAGGCCTTTCATCTTTGAAGATTCTTAGCCTTAGATCAAACAACTTCACCGGTAACTCATTGTCTGAATGCATCCCC
GATGAGTTAACAAACCTCCAAGGCCTTCGATTTCTGAACTTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5622.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis