Browse Element(s) Details


Os.17250.1.S1_x_at

Description gb:AK105737.1
DB_XREF= gi:32990946
TID=Os.17250.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.17250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide transport protein (OSJNBa0079L16.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-A02, full insert sequence.
FL= gb:AK059075.1 gb:AK105737.1 gb:AK101007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3317011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33110Os.46543.2.S1_at5/1110+17017221..17020331Leucine Rich Repeat family protein
LOC_Os10g33130Os.17156.1.S1_at2/1110+17028870..17032231Leucine Rich Repeat family protein, expressed
LOC_Os10g33140Os.5622.2.S1_x_at11/1110+17035636..17037423Leucine Rich Repeat family protein, expressed
LOC_Os10g33140Os.5622.1.S1_at11/1110+17035636..17037423Leucine Rich Repeat family protein, expressed
LOC_Os10g33140Os.46812.2.S1_x_at1/1110+17035636..17037423Leucine Rich Repeat family protein, expressed
LOC_Os10g33170Os.17250.1.S1_at11/1110+17045068..17049651POT family protein, expressed
LOC_Os10g33170Os.17250.1.S1_x_at11/1110+17045068..17049651POT family protein, expressed
LOC_Os10g33190Os.31845.2.S1_x_at1/1110+17060331..17066649expressed protein
LOC_Os10g33200OsAffx.8030.1.S1_at10/1110+17070572..17071409hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17250.1.S1_x_at--972--8251Chr10:17048963..17048987 (25 bp)
GGCAGCTGCCGGTGACGATCTTCAT
LOC_Os10g33170
Os.17250.1.S1_x_at--365--9931Chr10:17049115..17049139 (25 bp)
TACGGCGCCGGGAACCTGCTGAGCA
LOC_Os10g33170
Os.17250.1.S1_x_at--1054--7611Chr10:17049124..17049148 (25 bp)
GGGAACCTGCTGAGCAGCGCCATCC
LOC_Os10g33170
Os.17250.1.S1_x_at--1090--8091Chr10:17049188..17049212 (25 bp)
GGACGCCGTGGGTGACCAACAACCT
LOC_Os10g33170
Os.17250.1.S1_x_at--864--1791Chr10:17049190..17049214 (25 bp)
ACGCCGTGGGTGACCAACAACCTCA
LOC_Os10g33170
Os.17250.1.S1_x_at--630--9131Chr10:17049272..17049296 (25 bp)
TGCTGGCGTTCGTCGTGCTCAGCTG
LOC_Os10g33170
Os.17250.1.S1_x_at--1000--552Chr10:17049433..17049457 (25 bp)
ATCCTGTCTATTCCCGTCTGGATTC
LOC_Os10g33170
Os.17250.1.S1_x_at--17--8731Chr10:17049437..17049461 (25 bp)
TGTCTATTCCCGTCTGGATTCTGAA
LOC_Os10g33170
Os.17250.1.S1_x_at--883--7111Chr10:17049438..17049462 (25 bp)
GTCTATTCCCGTCTGGATTCTGAAG
LOC_Os10g33170
Os.17250.1.S1_x_at--307--9551Chr10:17049439..17049463 (25 bp)
TCTATTCCCGTCTGGATTCTGAAGT
LOC_Os10g33170
Os.17250.1.S1_x_at--72--3691Chr10:17049440..17049464 (25 bp)
CTATTCCCGTCTGGATTCTGAAGTT
LOC_Os10g33170
Target Sequence 
GGCAGCTGCCGGTGACGATCTTCATCCTGCTGCCGCAGTTCGTGCTGCTGGGCGTCGCCGACGCGTTCCTGGTGGTGGGG
CAGATCGAGTTCTTCTACGACCAGGCGCCGGAGAGCATGAAGAGCCTCGGGACGGCGATGTCGCTGACGGCGTACGGCGC
CGGGAACCTGCTGAGCAGCGCCATCCTCGCGGCCGTCGAGCGGGTCACCGGCGGCGGCAAGGGGAGGACGCCGTGGGTGA
CCAACAACCTCAACGCCTCGCGCCTCGACTACTACTACGCGTTCCTCGCCACCCTCGCCGCCGCGAACCTGCTGGCGTTC
GTCGTGCTCAGCTGCAAGTACTCGTACCGCGTCGAGTCCACGGAGACCATCGACGTCGACGTCGCCATGGACAACGTCGC
GCAGGGCGGCGGCGTGGTGACGGTCAAATCAGAGGCAGCCCCAATGGCATGACAGCACTTCCGGAATTGTATCCTGTCTA
TTCCCGTCTGGATTCTGAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17250.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis