Browse Element(s) Details


OsAffx.20295.1.S1_at

Description tigr:9638.m02697
TID=OsAffx.20295.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3125011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31220NANA10+16042158..16046457retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31240Os.46565.2.S1_x_at11/1110+16053967..16057134expressed protein
LOC_Os10g31250OsAffx.20295.1.S1_at11/1110+16059064..16064038expressed protein
LOC_Os10g31250OsAffx.28164.2.S1_at2/1110+16059064..16064038expressed protein
LOC_Os10g31250Os.52574.2.S1_x_at1/1110+16059064..16064038expressed protein
LOC_Os10g31280OsAffx.18472.1.S1_at11/1110+16077908..16078688hypothetical protein
LOC_Os10g31290Os.46672.1.S1_at11/1110+16079569..16086346expressed protein
LOC_Os10g31300OsAffx.27523.2.S1_at11/1110+16088727..16090054hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20295.1.S1_at--165--6231Chr10:16059631..16059655 (25 bp)
GAGGCCGTCAGATGCTGATAATCCT
LOC_Os10g31250
OsAffx.20295.1.S1_at--738--8831Chr10:16059616..16059640 (25 bp)
TGATAATCCTTGGAGGCCTCACTAC
LOC_Os10g31250
OsAffx.20295.1.S1_at--556--4451Chr10:16059601..16059625 (25 bp)
GCCTCACTACTTGGTGTCTAGGACA
LOC_Os10g31250
OsAffx.20295.1.S1_at--147--3711Chr10:16059584..16059608 (25 bp)
CTAGGACATTGTCGCAGTACTGTGC
LOC_Os10g31250
OsAffx.20295.1.S1_at--1147--1171Chr10:16059569..16059593 (25 bp)
AGTACTGTGCTTATTTGCTCTGGCT
LOC_Os10g31250
OsAffx.20295.1.S1_at--540--5991Chr10:16059480..16059504 (25 bp)
GAGAGAAACCGTCTTCTTGGTAGAA
LOC_Os10g31250
OsAffx.20295.1.S1_at--1015--2771Chr10:16059457..16059481 (25 bp)
AAGAGTATATCTACCCTTTTCCTGG
LOC_Os10g31250
OsAffx.20295.1.S1_at--1031--4831Chr10:16059348..16059372 (25 bp)
GCTAATACCACCATTCTCAGGAAGG
LOC_Os10g31250
OsAffx.20295.1.S1_at--893--9451Chr10:16059245..16059269 (25 bp)
TCTGGGCAGGATTCGTGGTGCACTT
LOC_Os10g31250
OsAffx.20295.1.S1_at--1054--2931Chr10:16059207..16059231 (25 bp)
AAGGCTTCGCAGCACAAGATGTATC
LOC_Os10g31250
OsAffx.20295.1.S1_at--199--2391Chr10:16059098..16059122 (25 bp)
AAACGTCTGATACGGTGCTCCAGCA
LOC_Os10g31250
Target Sequence 
GAGGCCGTCAGATGCTGATAATCCTTGGAGGCCTCACTACTTGGTGTCTAGGACATTGTCGCAGTACTGTGCTTATTTGC
TCTGGCTGGTTCCTCCTCTCTTGCCGGGGAACAGCCTAATGGCGAAGGCGGTGATCACACAAGTTTACAGGGAGAGAAAC
CGTCTTCTTGGTAGAAGAGTATATCTACCCTTTTCCTGGTGTACTTCAACCACCAAAGTTCTTGACAAGCTCGAAACATA
TAGATCGGGGGAGATACAGTTATTTGCCGATGAAGCAGGAAACGCTAATACCACCATTCTCAGGAAGGGAGCAGAACTAG
GCATGGGCCTAATTACAGCGGCGAGGAGCGCTGACAGCGAAGCTCTGTGGAAGTTCCTGTCGGATTTCTGGGCAGGATTC
GTGGTGCACTTGGCTGAATCAACCAAGGCTTCGCAGCACAAGATGTATCTGACAGCCGGCGGGGAGTTGTCGACGCATCT
CTGGGCGCTGCTATCCCATGCCGGCTACCTAGGGGCCACGCCGCACGGCGACCAAACGTCTGATACGGTGCTCCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis