Browse Element(s) Details


OsAffx.20391.1.S1_at

Description tigr:9638.m02115
TID=OsAffx.20391.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2510011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25080NANA10+12576583..12582158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25090Os.46690.1.S1_x_at11/1110+12591576..12597050leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os10g25090Os.3356.1.S1_at9/1110+12591576..12597050leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os10g25100OsAffx.20391.1.S1_at11/1110+12606831..12608320hypothetical protein
LOC_Os10g25100OsAffx.655.1.S1_x_at1/1110+12606831..12608320hypothetical protein
LOC_Os10g25110Os.3354.1.S1_at11/1110+12609247..12615362Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os10g25110Os.57305.1.S1_at8/1110+12609247..12615362Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os10g25120NANA10+12630471..12633214hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20391.1.S1_at--281--811Chr10:12607459..12607483 (25 bp)
ATGGGAGGGCTACTCATGATCCTCA
LOC_Os10g25100
OsAffx.20391.1.S1_at--851--711Chr10:12607444..12607468 (25 bp)
ATGATCCTCAGCATGGTCTTTCCAA
LOC_Os10g25100
OsAffx.20391.1.S1_at--526--7811Chr10:12607226..12607454 (25 bp)
GGTCTTTCCAAGATAGCAGGTGAAT
LOC_Os10g25100
OsAffx.20391.1.S1_at--342--4971Chr10:12607194..12607218 (25 bp)
GCATCAGCAAGGCAACATTTCAGGT
LOC_Os10g25100
OsAffx.20391.1.S1_at--145--2511Chr10:12607181..12607205 (25 bp)
AACATTTCAGGTTCCCAAGCTGCTG
LOC_Os10g25100
OsAffx.20391.1.S1_at--379--5351Chr10:12607131..12607155 (25 bp)
GAAGAGATACCTGACCTTCCTGTCA
LOC_Os10g25100
OsAffx.20391.1.S1_at--1115--5811Chr10:12607119..12607143 (25 bp)
GACCTTCCTGTCAAAGTTTCAGAAC
LOC_Os10g25100
OsAffx.20391.1.S1_at--791--5551Chr10:12607077..12607101 (25 bp)
GAAACCTGACAACATCAAGGCTCAT
LOC_Os10g25100
OsAffx.20391.1.S1_at--589--2511Chr10:12607067..12607091 (25 bp)
AACATCAAGGCTCATCATACCAGGA
LOC_Os10g25100
OsAffx.20391.1.S1_at--548--651Chr10:12606993..12607017 (25 bp)
ATGCAGCAACCTTGTCCAGGTGATC
LOC_Os10g25100
OsAffx.20391.1.S1_at--266--8851Chr10:12606897..12606921 (25 bp)
TGATCATCATCAGCCTTACATGCAG
LOC_Os10g25100
Target Sequence 
ATGGGAGGGCTACTCATGATCCTCAGCATGGTCTTTCCAAGATAGCAGGTGAATCAACAAAGCATCAGCAAGGCAACATT
TCAGGTTCCCAAGCTGCTGCTGCTGTGAAGAGCAAGCCATGGAAGAAGAGATACCTGACCTTCCTGTCAAAGTTTCAGAA
CAAGATGAAGAAGCACAAGAAACCTGACAACATCAAGGCTCATCATACCAGGAGCCACAAAACCCGCAGCATTCTCCTCT
CCAGCAGCCAGATCATGGAGGAATGCAGCAACCTTGTCCAGGTGATCCGGCACACCGCCGCCGACTGCTTCGCCGCCGCG
GCGACGGCGGTGGCGGCGGCGGTGGACTACGAGGAGGATGATCATCATCAGCCTTACATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis