Browse Element(s) Details


OsAffx.20496.1.S1_at

Description tigr:9638.m01639
TID=OsAffx.20496.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 35
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1996011/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19930Os.46012.1.S1_at6/1110+9663266..9663691retrotransposon protein, putative, unclassified
LOC_Os10g19940Os.46012.2.S1_x_at8/1110+9669751..9671388retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19940Os.27088.1.A1_x_at5/1110+9669751..9671388retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19940Os.46012.3.S1_x_at5/1110+9669751..9671388retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19950NANA10+9672099..9675214retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19960OsAffx.20496.1.S1_at11/1110+9680684..9685874Beta-galactosidase precursor, putative, expressed
LOC_Os10g19960OsAffx.20496.1.S1_s_at11/1110+9680684..9685874Beta-galactosidase precursor, putative, expressed
LOC_Os10g19970NANA10+9691163..9691976expressed protein
LOC_Os10g19980NANA10+9694298..9695478hypothetical protein
LOC_Os10g19990OsAffx.30455.1.S1_at11/1110+9697120..9698348hypothetical protein
LOC_Os10g20000NANA10+9700997..9704129retrotransposon protein, putative, unclassified
LOC_Os10g20010NANA10+9704757..9705092retrotransposon protein, putative, unclassified
LOC_Os10g20020NANA10+9707140..9713864retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20496.1.S1_at--1103--1111Chr10:9681294..9681318 (25 bp)
AGTGCCTCACGGGTTGCGGAGAACC
LOC_Os10g19960
OsAffx.20496.1.S1_at--588--3331Chr10:9681287..9681311 (25 bp)
CACGGGTTGCGGAGAACCCTCGCAA
LOC_Os10g19960
OsAffx.20496.1.S1_at--1142--4671Chr10:9681279..9681303 (25 bp)
GCGGAGAACCCTCGCAACAGCTCTA
LOC_Os10g19960
OsAffx.20496.1.S1_at--354--2491Chr10:9681264..9681288 (25 bp)
AACAGCTCTACCATGTGCCACGCTC
LOC_Os10g19960
OsAffx.20496.1.S1_at--455--7991Chr10:9681176..9681200 (25 bp)
GGAGGTGGCGGTCCGCACCGTGGTG
LOC_Os10g19960
OsAffx.20496.1.S1_at--182--3351Chr10:9681161..9681185 (25 bp)
CACCGTGGTGGAGGGTTCCGTGTGT
LOC_Os10g19960
OsAffx.20496.1.S1_at--207--10671Chr10:9681146..9681170 (25 bp)
TTCCGTGTGTGCGTCTGCCGAGGTT
LOC_Os10g19960
OsAffx.20496.1.S1_at--238--9491Chr10:9681133..9681157 (25 bp)
TCTGCCGAGGTTGGTGACACTGTCA
LOC_Os10g19960
OsAffx.20496.1.S1_at--1117--7751Chr10:9681121..9681145 (25 bp)
GGTGACACTGTCACGCTGTCGTGTG
LOC_Os10g19960
OsAffx.20496.1.S1_at--943--8731Chr10:9681113..9681137 (25 bp)
TGTCACGCTGTCGTGTGGCGCGCAT
LOC_Os10g19960
OsAffx.20496.1.S1_at--787--4851Chr10:9681061..9681085 (25 bp)
GCTAGCTTCGGTGTGGCACGTGGCC
LOC_Os10g19960
Target Sequence 
AGTGCCTCACGGGTTGCGGAGAACCCTCGCAACAGCTCTACCATGTGCCACGCTCCTTCCTCAACAAAGGGGAGCCCAAC
ACACTCATCCTCTTCGAGGAAGCCGGCGGCGACCCGTCGGAGGTGGCGGTCCGCACCGTGGTGGAGGGTTCCGTGTGTGC
GTCTGCCGAGGTTGGTGACACTGTCACGCTGTCGTGTGGCGCGCATGGCAGGACCATTTCGAGTGTTGATGTGGCTAGCT
TCGGTGTGGCACGTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis