Browse Element(s) Details


OsAffx.20496.1.S1_s_at

Description tigr:9638.m01639
TID=OsAffx.20496.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 35
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1996011/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19930Os.46012.1.S1_at6/1110+9663266..9663691retrotransposon protein, putative, unclassified
LOC_Os10g19940Os.46012.2.S1_x_at8/1110+9669751..9671388retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19940Os.27088.1.A1_x_at5/1110+9669751..9671388retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19940Os.46012.3.S1_x_at5/1110+9669751..9671388retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19950NANA10+9672099..9675214retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19960OsAffx.20496.1.S1_at11/1110+9680684..9685874Beta-galactosidase precursor, putative, expressed
LOC_Os10g19960OsAffx.20496.1.S1_s_at11/1110+9680684..9685874Beta-galactosidase precursor, putative, expressed
LOC_Os10g19970NANA10+9691163..9691976expressed protein
LOC_Os10g19980NANA10+9694298..9695478hypothetical protein
LOC_Os10g19990OsAffx.30455.1.S1_at11/1110+9697120..9698348hypothetical protein
LOC_Os10g20000NANA10+9700997..9704129retrotransposon protein, putative, unclassified
LOC_Os10g20010NANA10+9704757..9705092retrotransposon protein, putative, unclassified
LOC_Os10g20020NANA10+9707140..9713864retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20496.1.S1_s_at--865--1051Chr10:9681003..9681027 (25 bp)
AGGTGGCTTATGACGCATTTGCGGC
LOC_Os10g19960
OsAffx.20496.1.S1_s_at--938--2911Chr10:9680965..9680989 (25 bp)
AAGGAGTCGTGCACGGTGCTTGTCA
LOC_Os10g19960
OsAffx.20496.1.S1_s_at--296--9071Chr10:9680949..9680973 (25 bp)
TGCTTGTCACCGATGCGTTTGCCAA
LOC_Os10g19960
OsAffx.20496.1.S1_s_at--564--6851Chr10:9680933..9680957 (25 bp)
GTTTGCCAATGCTGGTTGTGTCTCT
LOC_Os10g19960
OsAffx.20496.1.S1_s_at--751--10831Chr10:9680918..9680942 (25 bp)
TTGTGTCTCTGGTGTGCTCACTGTC
LOC_Os10g19960
OsAffx.20496.1.S1_s_at--683--1951Chr10:9680899..9680923 (25 bp)
ACTGTCCAGGCCACTTGCTGAGAAA
LOC_Os10g19960
OsAffx.20496.1.S1_s_at--458--3071Chr10:9680874..9680898 (25 bp)
AATCAGTGAATTGACCACGTCCTGG
LOC_Os10g19960
OsAffx.20496.1.S1_s_at--189--4371Chr10:9680860..9680884 (25 bp)
CCACGTCCTGGATAGTTGCTCAATA
LOC_Os10g19960
OsAffx.20496.1.S1_s_at--294--6671Chr10:9680846..9680870 (25 bp)
GTTGCTCAATAGGTTGGTTTGTTTA
LOC_Os10g19960
OsAffx.20496.1.S1_s_at--600--1011Chr10:9680807..9680831 (25 bp)
AGGTTAACATTCTTTTTGGTATCAG
LOC_Os10g19960
OsAffx.20496.1.S1_s_at--13--6391Chr10:9680783..9680807 (25 bp)
GATCGTGGAAGACTTTTTTCCTTCA
LOC_Os10g19960
Target Sequence 
AGGTGGCTTATGACGCATTTGCGGCCGCGTGCGTTGGGAAGGAGTCGTGCACGGTGCTTGTCACCGATGCGTTTGCCAAT
GCTGGTTGTGTCTCTGGTGTGCTCACTGTCCAGGCCACTTGCTGAGAAAAATCAGTGAATTGACCACGTCCTGGATAGTT
GCTCAATAGGTTGGTTTGTTTAGGATAATAAGCTATAGGTTAACATTCTTTTTGGTATCAGATCGTGGAAGACTTTTTTC
CTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20496.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis