Browse Element(s) Details


OsAffx.20506.1.S1_at

Description tigr:9638.m01596
TID=OsAffx.20506.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1904011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19000Os.47463.1.S1_x_at6/1110+9343683..9345900transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19000Os.14491.2.S1_x_at6/1110+9343683..9345900transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19010NANA10+9347314..9351611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19020NANA10+9353217..9356549transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19030OsAffx.6699.1.S1_at11/1110+9359671..9360007hypothetical protein
LOC_Os10g19030OsAffx.6699.1.S1_x_at11/1110+9359671..9360007hypothetical protein
LOC_Os10g19040OsAffx.20506.1.S1_at11/1110+9365364..9366134hypothetical protein
LOC_Os10g19050NANA10+9368690..9370940hypothetical protein
LOC_Os10g19064OsAffx.8272.1.S1_at11/1110+9381377..9384396retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19064OsAffx.8980.1.S1_at1/1110+9381377..9384396retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19080Os.2987.3.S1_x_at6/1110+9385243..9387918retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20506.1.S1_at--388--3992Chr10:9366042..9366066 (25 bp)
CGTGAGGTTTTCGTGGTTGCCAGAA
LOC_Os10g19040
OsAffx.20506.1.S1_at--384--8091Chr10:9366005..9366029 (25 bp)
GGAGCCGGATTGTGGTACCCCTTGA
LOC_Os10g19040
OsAffx.20506.1.S1_at--525--1791Chr10:9365989..9366013 (25 bp)
ACCCCTTGATTGTCCGTCTTGTAGA
LOC_Os10g19040
OsAffx.20506.1.S1_at--720--10791Chr10:9365809..9365995 (25 bp)
TTGTAGAGCCGGTCGCATACACGCT
LOC_Os10g19040
OsAffx.20506.1.S1_at--683--9311Chr10:9365797..9365821 (25 bp)
TCGCATACACGCTCAGAACACAATT
LOC_Os10g19040
OsAffx.20506.1.S1_at--642--5591Chr10:9365750..9365774 (25 bp)
GAAATACTGTGTGGTACCTTGGAGT
LOC_Os10g19040
OsAffx.20506.1.S1_at--907--1651Chr10:9365661..9365685 (25 bp)
AGCCCATGGAGCTGTACAGGATCAG
LOC_Os10g19040
OsAffx.20506.1.S1_at--10--2571Chr10:9365558..9365582 (25 bp)
AACTGTGGGCCATCTGTAGACGGGA
LOC_Os10g19040
OsAffx.20506.1.S1_at--91--2791Chr10:9365502..9365526 (25 bp)
AAGAGGAGCTGTTGCCTGTTGCGTC
LOC_Os10g19040
OsAffx.20506.1.S1_at--388--6691Chr10:9365492..9365516 (25 bp)
GTTGCCTGTTGCGTCATTGAGGAGA
LOC_Os10g19040
OsAffx.20506.1.S1_at--241--6231Chr10:9365423..9365447 (25 bp)
GAGGCCATCAATTCCATGGCTTGGA
LOC_Os10g19040
Target Sequence 
CGTGAGGTTTTCGTGGTTGCCAGAATGGCGTCGAGGTGGAGCCGGATTGTGGTACCCCTTGATTGTCCGTCTTGTAGAGC
CGGTCGCATACACGCTCAGAACACAATTACATAGGTTGCGATTGGAAATAGAAATACTGTGTGGTACCTTGGAGTATTTG
AGGGCAACGCCGACGAGGCGACCAGAGCCCTGCCGACCGCAAACTTCCTGCAGTCCCTCAGCCCATGGAGCTGTACAGGA
TCAGAAAAATCGCATGTTCAGAGGGGTGGCCGGACGGGCAGGTGAAGGACCGGGAGACGGCTTGGGAGGGAAGGAGGAGG
CAAACTGTGGGCCATCTGTAGACGGGATTGGAGGCGATGGGATTTGGGCGTCGCCGTCAAGAGGAGCTGTTGCCTGTTGC
GTCATTGAGGAGAGGAGCGGGCGGCTTGGAGCGACGGGGGAAGGGTCGGCGTTGAGGGAGGCCATCAATTCCATGGCTTG
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis