Browse Element(s) Details


OsAffx.6699.1.S1_x_at

Description tigr:9638.m01595
TID=OsAffx.6699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1903011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18990OsAffx.20507.1.S1_at11/1110+9335789..9339059Leucine Rich Repeat family protein
LOC_Os10g19000Os.47463.1.S1_x_at6/1110+9343683..9345900transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19000Os.14491.2.S1_x_at6/1110+9343683..9345900transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19010NANA10+9347314..9351611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19020NANA10+9353217..9356549transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19030OsAffx.6699.1.S1_at11/1110+9359671..9360007hypothetical protein
LOC_Os10g19030OsAffx.6699.1.S1_x_at11/1110+9359671..9360007hypothetical protein
LOC_Os10g19040OsAffx.20506.1.S1_at11/1110+9365364..9366134hypothetical protein
LOC_Os10g19050NANA10+9368690..9370940hypothetical protein
LOC_Os10g19064OsAffx.8272.1.S1_at11/1110+9381377..9384396retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19064OsAffx.8980.1.S1_at1/1110+9381377..9384396retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6699.1.S1_x_at--897--4671Chr10:9359703..9359727 (25 bp)
GCGGATCAGGAGCTTCGCCTCAGCT
LOC_Os10g19030
OsAffx.6699.1.S1_x_at--441--971Chr10:9359710..9359734 (25 bp)
AGGAGCTTCGCCTCAGCTGCGATAA
LOC_Os10g19030
OsAffx.6699.1.S1_x_at--1058--10631Chr10:9359716..9359740 (25 bp)
TTCGCCTCAGCTGCGATAAGCTCGG
LOC_Os10g19030
OsAffx.6699.1.S1_x_at--653--3751Chr10:9359721..9359745 (25 bp)
CTCAGCTGCGATAAGCTCGGTGGAG
LOC_Os10g19030
OsAffx.6699.1.S1_x_at--60--6451Chr10:9359752..9359776 (25 bp)
GATCAGGAGCTTCGACTCAGCTGCT
LOC_Os10g19030
OsAffx.6699.1.S1_x_at--1151--1591Chr10:9359770..9359794 (25 bp)
AGCTGCTGCTTGCTCCGCTCAAGCT
LOC_Os10g19030
OsAffx.6699.1.S1_x_at--859--4831Chr10:9359786..9359810 (25 bp)
GCTCAAGCTCCAACACAGTGGTTTG
LOC_Os10g19030
OsAffx.6699.1.S1_x_at--253--4771Chr10:9359792..9359816 (25 bp)
GCTCCAACACAGTGGTTTGGTGGTG
LOC_Os10g19030
OsAffx.6699.1.S1_x_at--554--7192Chr10:9359832..9359856 (25 bp)
GTCGGACCGCTCGACGATGGCGAAA
LOC_Os10g19030
OsAffx.6699.1.S1_x_at--132--1791Chr10:9359837..9359861 (25 bp)
ACCGCTCGACGATGGCGAAATCCTT
LOC_Os10g19030
OsAffx.6699.1.S1_x_at--77--8391Chr10:9359850..9359874 (25 bp)
GGCGAAATCCTTGGCATTTGAATTG
LOC_Os10g19030
Target Sequence 
GCGGATCAGGAGCTTCGCCTCAGCTGCGATAAGCTCGGTGGAGGGAGCGGATCAGGAGCTTCGACTCAGCTGCTGCTTGC
TCCGCTCAAGCTCCAACACAGTGGTTTGGTGGTGCGCGAAGCGCCAGCCGTCGGACCGCTCGACGATGGCGAAATCCTTG
GCATTTGAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6699.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis