Browse Element(s) Details


OsAffx.20507.1.S1_at

Description tigr:9638.m01591
TID=OsAffx.20507.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1899011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18940OsAffx.8356.1.S1_x_at1/1110+9312393..9316371Transposable element protein, putative, Retrotrans_gag
LOC_Os10g18940OsAffx.14826.1.S1_at1/1110+9312393..9316371Transposable element protein, putative, Retrotrans_gag
LOC_Os10g18950Os.56292.1.S1_at1/1110+9317591..9318748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18950Os.56292.1.S1_x_at1/1110+9317591..9318748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18960Os.47004.1.S1_at11/1110+9321469..9323842retrotransposon protein, putative, unclassified
LOC_Os10g18960Os.10731.1.A1_a_at11/1110+9321469..9323842retrotransposon protein, putative, unclassified
LOC_Os10g18960Os.48015.1.A1_x_at2/1110+9321469..9323842retrotransposon protein, putative, unclassified
LOC_Os10g18970OsAffx.31869.1.S1_at10/1110+9326581..9327696retrotransposon protein, putative, unclassified
LOC_Os10g18970OsAffx.31869.5.S1_x_at5/1110+9326581..9327696retrotransposon protein, putative, unclassified
LOC_Os10g18970OsAffx.31869.3.S1_s_at1/1110+9326581..9327696retrotransposon protein, putative, unclassified
LOC_Os10g18970OsAffx.31869.2.S1_at1/1110+9326581..9327696retrotransposon protein, putative, unclassified
LOC_Os10g18970OsAffx.31869.4.S1_x_at1/1110+9326581..9327696retrotransposon protein, putative, unclassified
LOC_Os10g18980NANA10+9331768..9333386hypothetical protein
LOC_Os10g18990OsAffx.20507.1.S1_at11/1110+9335789..9339059Leucine Rich Repeat family protein
LOC_Os10g19000Os.47463.1.S1_x_at6/1110+9343683..9345900transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19000Os.14491.2.S1_x_at6/1110+9343683..9345900transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19010NANA10+9347314..9351611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19020NANA10+9353217..9356549transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19030OsAffx.6699.1.S1_at11/1110+9359671..9360007hypothetical protein
LOC_Os10g19030OsAffx.6699.1.S1_x_at11/1110+9359671..9360007hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009887biological_processorgan morphogenesis
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0030155biological_processregulation of cell adhesion
GO:0042831biological_processdefense response to pathogenic fungi
GO:0051301biological_processcell division
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20507.1.S1_at--458--6211Chr10:9338316..9338340 (25 bp)
GAGGCTCAATTGGTTACCTTGCACC
LOC_Os10g18990
OsAffx.20507.1.S1_at--742--331Chr10:9338702..9338726 (25 bp)
ATACAGCTACGGAGTGTTGGTTCTC
LOC_Os10g18990
OsAffx.20507.1.S1_at--300--10871Chr10:9338718..9338742 (25 bp)
TTGGTTCTCCAAATGCTGACCGGGA
LOC_Os10g18990
OsAffx.20507.1.S1_at--359--4231Chr10:9338737..9338761 (25 bp)
CCGGGAAAGAACCAACTGACGCAAT
LOC_Os10g18990
OsAffx.20507.1.S1_at--980--5791Chr10:9338754..9338778 (25 bp)
GACGCAATATACGATGGGACTACAA
LOC_Os10g18990
OsAffx.20507.1.S1_at--202--9851Chr10:9338774..9338798 (25 bp)
TACAAGTCTTCCAAAATACGTCGAG
LOC_Os10g18990
OsAffx.20507.1.S1_at--616--6031Chr10:9338796..9338820 (25 bp)
GAGATGACCTATCCGGACAAGCTAT
LOC_Os10g18990
OsAffx.20507.1.S1_at--494--3691Chr10:9338817..9338841 (25 bp)
CTATCTCCAATAGTCGACGCAGCTA
LOC_Os10g18990
OsAffx.20507.1.S1_at--491--10411Chr10:9338842..9338866 (25 bp)
TTATTGCTAACAGTGGCGGCGGCCA
LOC_Os10g18990
OsAffx.20507.1.S1_at--1052--2251Chr10:9338876..9338900 (25 bp)
AAATATGTTCATTGTGCCAGTTGCA
LOC_Os10g18990
OsAffx.20507.1.S1_at--85--5571Chr10:9338963..9338987 (25 bp)
GAAAGAACTGGTCCCGTTGAACAAG
LOC_Os10g18990
Target Sequence 
GAGGCTCAATTGGTTACCTTGCACCAGAGTATGGGATGGGAGCCGAGATATCAGCTAGAGGTGGTGTATACAGCTACGGA
GTGTTGGTTCTCCAAATGCTGACCGGGAAAGAACCAACTGACGCAATATACGATGGGACTACAAGTCTTCCAAAATACGT
CGAGATGACCTATCCGGACAAGCTATCTCCAATAGTCGACGCAGCTATTATTGCTAACAGTGGCGGCGGCCAAGAGACGA
TAAATATGTTCATTGTGCCAGTTGCAAAAATTGGTCTAGCATGCTGCAGAGATAACGCTAGCCAGCGAATGAACTTCGGT
GAGATAGTGAAAGAACTGGTCCCGTTGAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis