Browse Element(s) Details


OsAffx.20676.1.S1_at

Description gb:NM_195154.1
DB_XREF= gi:37531667
TID=OsAffx.20676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposable element (OSJNBa0047G15.6), mRNA.
PROD=putative transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0990011/11transposon protein, putative, Mutator sub-class
LOC_Os09g266902/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09870Os.50561.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.51981.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.4824.1.A1_s_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09880Os.40855.2.S1_x_at3/1110+5117300..5119003hypothetical protein
LOC_Os10g09890OsAffx.20677.1.S1_at11/1110+5126814..5127359hypothetical protein
LOC_Os10g09900OsAffx.20676.1.S1_at11/1110+5128002..5131279transposon protein, putative, Mutator sub-class
LOC_Os10g09910OsAffx.30364.1.S1_x_at11/1110+5131494..5132315hypothetical protein
LOC_Os10g09920OsAffx.30365.1.S1_at11/1110+5135311..5135697Protease inhibitor/seed storage/LTP family protein
LOC_Os10g09930Os.8253.1.S1_at10/1110+5145817..5146916expressed protein
LOC_Os10g09940NANA10+5151577..5155321retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20676.1.S1_at--748--6452Chr10:5128709..5128733 (25 bp)
GATCACACTGGCCAGAGGTTGATTT
LOC_Os10g09900
OsAffx.20676.1.S1_at--593--8811Chr10:5128676..5128700 (25 bp)
TGTTGGGTGCACCACTACCAAGGAA
LOC_Os10g09900
OsAffx.20676.1.S1_at--957--4751Chr10:5128575..5128599 (25 bp)
GCTGAACCAACTGCTACTGATAAGG
LOC_Os10g09900
OsAffx.20676.1.S1_at--631--6632Chr10:5128511..5128535 (25 bp)
GTTGTCGAGAGTTGGGTCATACACA
LOC_Os10g09900
OsAffx.20676.1.S1_at--517--3531Chr10:5128339..5128363 (25 bp)
CATCTGAAATTCCAAGCCCAAGTAG
LOC_Os10g09900
OsAffx.20676.1.S1_at--23--3231Chr10:5128321..5128345 (25 bp)
CAAGTAGGCCTACAGTGGACACAAT
LOC_Os10g09900
OsAffx.20676.1.S1_at--960--211Chr10:5128298..5128322 (25 bp)
ATATTGCAAGACAACCCTGGAAGGT
LOC_Os10g09900
OsAffx.20676.1.S1_at--1153--1111Chr10:5128125..5128149 (25 bp)
AGTGCAAGCTGGACCTAGCTCCCAG
LOC_Os10g09900
OsAffx.20676.1.S1_at--452--1531Chr10:5128059..5128083 (25 bp)
AGCAGGATCAAGCAAGCAGCCCACA
LOC_Os10g09900
OsAffx.20676.1.S1_at--1074--2711Chr10:5128046..5128070 (25 bp)
AAGCAGCCCACAATGGTTCCAGAAC
LOC_Os10g09900
OsAffx.20676.1.S1_at--197--7891Chr10:5128032..5128056 (25 bp)
GGTTCCAGAACCACCAAGAAGATCT
LOC_Os10g09900
Target Sequence 
GATCACACTGGCCAGAGGTTGATTTACCATGGGTGTTGGGTGCACCACTACCAAGGAAGACATCTGGTAGAAACAGAAAA
CTTAGGTTCAAGGGTTGTCTTGAAGGTGGGGGCAAGAAGAAAGCTAAGGTTATAGCTGAACCAACTGCTACTGATAAGGG
CAAGAGGCAACTGCTTAGAGGCAAGAGGAGGTGCAAAGGTTGTCGAGAGTTGGGTCATACACAAAACAGCTACAAATGTG
CACTCAATGGAACTAAGAAAAGGAAAAGGAAGCCTAGAAGGAATACTACCAAGTATGGCCACACATCTGAAATTCCAAGC
CCAAGTAGGCCTACAGTGGACACAATATTGCAAGACAACCCTGGAAGGTTGACAAGAAGCAGTAGGTTGGCACAGCTGAT
GAATGGACCAGGGCCTAGCTCCCAGCCCACAGTGCAAGCTGGACCTAGCTCCCAGCCCACAATGCAAACCACATCAAGCT
CCCAGCCCACAGTGCAAGCAGGATCAAGCAAGCAGCCCACAATGGTTCCAGAACCACCAAGAAGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis