Browse Element(s) Details


Os.8253.1.S1_at

Description gb:AK106781.1
DB_XREF= gi:32991990
TID=Os.8253.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0047G15.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H06, full insert sequence.
FL= gb:AK106781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0993010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09890OsAffx.20677.1.S1_at11/1110+5126814..5127359hypothetical protein
LOC_Os10g09900OsAffx.20676.1.S1_at11/1110+5128002..5131279transposon protein, putative, Mutator sub-class
LOC_Os10g09910OsAffx.30364.1.S1_x_at11/1110+5131494..5132315hypothetical protein
LOC_Os10g09920OsAffx.30365.1.S1_at11/1110+5135311..5135697Protease inhibitor/seed storage/LTP family protein
LOC_Os10g09930Os.8253.1.S1_at10/1110+5145817..5146916expressed protein
LOC_Os10g09940NANA10+5151577..5155321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g09950NANA10+5161571..5163756retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09960OsAffx.31869.3.S1_s_at11/1110+5166824..5167921retrotransposon protein, putative, unclassified, expressed
LOC_Os10g09960OsAffx.31869.3.S1_x_at4/1110+5166824..5167921retrotransposon protein, putative, unclassified, expressed
LOC_Os10g09960OsAffx.31869.5.S1_x_at3/1110+5166824..5167921retrotransposon protein, putative, unclassified, expressed
LOC_Os10g09960OsAffx.31869.4.S1_x_at1/1110+5166824..5167921retrotransposon protein, putative, unclassified, expressed
LOC_Os10g09970Os.23638.1.A1_x_at1/1110+5171140..5176142retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8253.1.S1_at--81--10671Chr10:5146474..5146498 (25 bp)
TTCCTCATGGTGTCCATGGTCATGG
LOC_Os10g09930
Os.8253.1.S1_at--28--831Chr10:5146489..5146513 (25 bp)
ATGGTCATGGTCGTGCAGATCCGCC
LOC_Os10g09930
Os.8253.1.S1_at--183--9691Chr10:5146625..5146649 (25 bp)
TCACCCACTGAACAAGCAAGCAACT
LOC_Os10g09930
Os.8253.1.S1_at--232--5171Chr10:5146640..5146664 (25 bp)
GCAAGCAACTGGCATGGATGTTTCT
LOC_Os10g09930
Os.8253.1.S1_at--15--8571Chr10:5146654..5146678 (25 bp)
TGGATGTTTCTTGAGTTCTATGGCA
LOC_Os10g09930
Os.8253.1.S1_at--741--6051Chr10:5146666..5146690 (25 bp)
GAGTTCTATGGCATTGTCTGTAGTA
LOC_Os10g09930
Os.8253.1.S1_at--144--6951Chr10:5146685..5146709 (25 bp)
GTAGTAGAATCTTGCATCTGCTGTT
LOC_Os10g09930
Os.8253.1.S1_at--971--31Chr10:5146719..5146743 (25 bp)
ATTGTGGACTTCAAAATGTTGCGAG
LOC_Os10g09930
Os.8253.1.S1_at--536--3111Chr10:5146793..5146817 (25 bp)
AATATGTTTGCGATTCTCATCCCAG
LOC_Os10g09930
Os.8253.1.S1_at--747--3531Chr10:5146810..5146834 (25 bp)
CATCCCAGGTCGTTTTGAATTTCTT
LOC_Os10g09930
Os.8253.1.S1_at--555--151Chr10:5146893..5146917 (25 bp)
ATTTAGACTGAATGCCTGTAATGTA
NONE
Target Sequence 
TTCCTCATGGTGTCCATGGTCATGGTCGTGCAGATCCGCCTCGGCACGCTCGGCTGCGCCACCAACCGCGCCGCCGCCAA
GGCCGCCGCAGGGCTCGTCGGCCTCGTCACCACCGCGCTCGCCGTCTACGTCGGCACCGTCTTCTACACCTTCACCCACT
GAACAAGCAAGCAACTGGCATGGATGTTTCTTGAGTTCTATGGCATTGTCTGTAGTAGAATCTTGCATCTGCTGTTTATG
TATGTATTGTGGACTTCAAAATGTTGCGAGATGAGGAAGTGGAAGATGTTGGTGATCCGACTTTTATGAATCAACCTGCA
ATATGTTTGCGATTCTCATCCCAGGTCGTTTTGAATTTCTTAAGTTGGCACTAGATTAATAGTGGTGTAGACTGAATTTT
GATTTTGGATTGAATTTTAATTTAGACTGAATGCCTGTAATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis