Browse Element(s) Details


OsAffx.20705.2.S1_x_at

Description tigr:9638.m00773
TID=OsAffx.20705.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0902010/11hypothetical protein
LOC_Os12g148601/11hypothetical protein
LOC_Os04g198901/11Transposable element protein, putative, Transposase_28
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08980OsAffx.30348.1.S1_at11/1110+4623193..4626048zeaxanthin cleavage oxygenase, putative
LOC_Os10g08990Os.41248.4.S1_x_at1/1110+4626852..4630147retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g09000OsAffx.25805.1.S1_x_at8/1110+4634100..4634439hypothetical protein
LOC_Os10g09000OsAffx.25805.1.S1_at7/1110+4634100..4634439hypothetical protein
LOC_Os10g09020OsAffx.20705.2.S1_x_at10/1110+4647175..4650925hypothetical protein
LOC_Os10g09030NANA10+4652826..4654828transposon protein, putative, unclassified
LOC_Os10g09040OsAffx.30350.1.S1_at11/1110+4656932..4657132hypothetical protein
LOC_Os10g09050OsAffx.20877.1.S1_at1/1110+4664225..4666248hypothetical protein
LOC_Os10g09060NANA10+4668502..4672011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09070NANA10+4672698..4674013retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20705.2.S1_x_at--751--1071Chr10:4650265..4650289 (25 bp)
AGGGAGCGCTGCAGCTGGTACTTCA
LOC_Os10g09020
OsAffx.20705.2.S1_x_at--77--7851Chr10:4650281..4650305 (25 bp)
GGTACTTCAGGTTCTGCTGACCGGG
LOC_Os10g09020
OsAffx.20705.2.S1_x_at--631--1791Chr10:4650361..4650385 (25 bp)
ACCGCTGGCCATCCAAAACGGGAAG
LOC_Os10g09020
OsAffx.20705.2.S1_x_at--790--1391Chr10:4650399..4650423 (25 bp)
AGACGTCGGCTTCAGAGTATTCGCT
LOC_Os10g09020
OsAffx.20705.2.S1_x_at--11--2853Chr12:8506992..8507015 (24 bp)
AAGTCATCTCGTTTCTCCGGCTGGA
LOC_Os12g14860
OsAffx.20705.2.S1_x_at--208--5331Chr10:4650516..4650540 (25 bp)
GAAGTCCGAGCCTGTTCACTGAGTT
LOC_Os10g09020
OsAffx.20705.2.S1_x_at--549--1871Chr10:4650552..4650576 (25 bp)
ACGAGGGCTGTACCGCTGTCAAAAG
LOC_Os10g09020
OsAffx.20705.2.S1_x_at--978--2391Chr10:4650572..4650677 (25 bp)
AAAAGCTTAGCCGTCTGGATACCCG
LOC_Os10g09020
OsAffx.20705.2.S1_x_at--601--8571NONE
TGGATACCCGCAGCTCATTGTTCGA
NONE
OsAffx.20705.2.S1_x_at--591--7571Chr10:4650708..4650732 (25 bp)
GGGCTCGCCTTGACAGCTTTAAAAG
LOC_Os10g09020
OsAffx.20705.2.S1_x_at--860--9811Chr10:4650727..4650751 (25 bp)
TAAAAGTCGTCTTCGGGCTAAGGAT
LOC_Os10g09020
Target Sequence 
AGGGAGCGCTGCAGCTGGTACTTCAGGTTCTGCTGACCGGGTTGTGAAGGCTGCTGCCAGGCTCTTCGGGAGCCCTCCGC
ACAGTCCACCTACTTCACCGCTGGCCATCCAAAACGGGAAGAAGGCGGCCGTTGAGACGTCGGCTTCAGAGTATTCGCTC
ACGGCGCCCTGCTTCGTCCCTTGGGATTTCGAGACCCGGGTGGATCTTACCCCCTTCATCGAGGGGGTAAGTCATCTCGT
TTCTCCGGCTGGAAGTCCGAGCCTGTTCACTGAGTTGAACGAGTTCAACGAGGGCTGTACCGCTGTCAAAAGCTTAGCCG
TCTGGATACCCGCAGCTCATTGTTCGACCGAGCGAACCGTGAGGGCTCGCCTTGACAGCTTTAAAAGTCGTCTTCGGGCT
AAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20705.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis