Browse Element(s) Details


OsAffx.20759.1.S1_at

Description gb:NM_194775.1
DB_XREF= gi:37530909
TID=OsAffx.20759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0087H07.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g047609/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04730Os.46730.1.S1_at11/1110+2241638..2246767Protein kinase domain containing protein, expressed
LOC_Os10g04740Os.46012.2.S1_x_at8/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.27088.1.A1_x_at6/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.46012.3.S1_x_at4/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04750OsAffx.20760.1.S1_at10/1110+2262698..2263592F-box domain containing protein
LOC_Os10g04760OsAffx.20759.1.S1_at9/1110+2265117..2266872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04770OsAffx.20758.1.S1_at11/1110+2273167..2277200expressed protein
LOC_Os10g04780Os.46729.1.S1_at10/1110+2280854..2284863F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20759.1.S1_at--44--7651NONE
GGGAGGCCGGCCGTACGTCATATTA
NONE
OsAffx.20759.1.S1_at--537--871NONE
AGGCCGGCCGTACGTCATATTATCA
NONE
OsAffx.20759.1.S1_at--182--3931Chr10:2265187..2265206 (20 bp)
CGGCCGTACGTCATATTATCATCTT
LOC_Os10g04760
OsAffx.20759.1.S1_at--906--8411Chr10:2265186..2265206 (21 bp)
GGCCGTACGTCATATTATCATCTTA
LOC_Os10g04760
OsAffx.20759.1.S1_at--643--1891Chr10:2265180..2265204 (25 bp)
ACGTCATATTATCATCTTACCGCAA
LOC_Os10g04760
OsAffx.20759.1.S1_at--831--7131Chr10:2265178..2265202 (25 bp)
GTCATATTATCATCTTACCGCAAAA
LOC_Os10g04760
OsAffx.20759.1.S1_at--1011--431Chr10:2265167..2265191 (25 bp)
ATCTTACCGCAAAAGATGTGCCCAC
LOC_Os10g04760
OsAffx.20759.1.S1_at--1156--10451Chr10:2265164..2265188 (25 bp)
TTACCGCAAAAGATGTGCCCACAAT
LOC_Os10g04760
OsAffx.20759.1.S1_at--1151--1291Chr10:2265154..2265178 (25 bp)
AGATGTGCCCACAATCTAGGGACGG
LOC_Os10g04760
OsAffx.20759.1.S1_at--454--8691Chr10:2265151..2265175 (25 bp)
TGTGCCCACAATCTAGGGACGGTTT
LOC_Os10g04760
OsAffx.20759.1.S1_at--342--4491Chr10:2265148..2265172 (25 bp)
GCCCACAATCTAGGGACGGTTTCGT
LOC_Os10g04760
Target Sequence 
GGGAGGCCGGCCGTACGTCATATTATCATCTTACCGCAAAAGATGTGCCCACAATCTAGGGACGGTTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis