Browse Element(s) Details


OsAffx.20760.1.S1_at

Description tigr:9638.m00385
TID=OsAffx.20760.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0475010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04730Os.46730.1.S1_at11/1110+2241638..2246767Protein kinase domain containing protein, expressed
LOC_Os10g04740Os.46012.2.S1_x_at8/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.27088.1.A1_x_at6/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.46012.3.S1_x_at4/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04750OsAffx.20760.1.S1_at10/1110+2262698..2263592F-box domain containing protein
LOC_Os10g04760OsAffx.20759.1.S1_at9/1110+2265117..2266872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04770OsAffx.20758.1.S1_at11/1110+2273167..2277200expressed protein
LOC_Os10g04780Os.46729.1.S1_at10/1110+2280854..2284863F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20760.1.S1_at--487--4411NONE
GCCACCATTTTAGTCTCGATCTATG
NONE
OsAffx.20760.1.S1_at--513--10051Chr10:2262872..2262896 (25 bp)
TAGTCTCGATCTATGGAAGAACAAG
LOC_Os10g04750
OsAffx.20760.1.S1_at--466--2771Chr10:2262850..2262874 (25 bp)
AAGACCAACTGTGATGATGCTACTG
LOC_Os10g04750
OsAffx.20760.1.S1_at--360--711Chr10:2262837..2262861 (25 bp)
ATGATGCTACTGGATGGGTGCTTGA
LOC_Os10g04750
OsAffx.20760.1.S1_at--1032--791Chr10:2262824..2262848 (25 bp)
ATGGGTGCTTGAGAGAACCATTCAA
LOC_Os10g04750
OsAffx.20760.1.S1_at--551--5431Chr10:2262810..2262834 (25 bp)
GAACCATTCAACTGGACAAGCTCCT
LOC_Os10g04750
OsAffx.20760.1.S1_at--157--2211Chr10:2262795..2262819 (25 bp)
ACAAGCTCCTTTCTGTCGAACCAGG
LOC_Os10g04750
OsAffx.20760.1.S1_at--966--10291Chr10:2262786..2262810 (25 bp)
TTTCTGTCGAACCAGGGCCTCGTAT
LOC_Os10g04750
OsAffx.20760.1.S1_at--327--1091Chr10:2262773..2262797 (25 bp)
AGGGCCTCGTATCACATCACCATGT
LOC_Os10g04750
OsAffx.20760.1.S1_at--1021--6891Chr10:2262765..2262789 (25 bp)
GTATCACATCACCATGTCTTGGCTT
LOC_Os10g04750
OsAffx.20760.1.S1_at--885--9671Chr10:2262757..2262781 (25 bp)
TCACCATGTCTTGGCTTTGTTGAGG
LOC_Os10g04750
Target Sequence 
GCCACCATTTTAGTCTCGATCTATGGAAGAACAAGACCAACTGTGATGATGCTACTGGATGGGTGCTTGAGAGAACCATT
CAACTGGACAAGCTCCTTTCTGTCGAACCAGGGCCTCGTATCACATCACCATGTCTTGGCTTTGTTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis