Browse Element(s) Details


OsAffx.20819.1.S1_at

Description gb:NM_194487.1
DB_XREF= gi:37530333
TID=OsAffx.20819.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0046L02.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0124011/11VQ motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01210NANA10+118261..119952retrotransposon protein, putative, unclassified
LOC_Os10g01230OsAffx.20820.1.S1_at11/1110+137336..138703retrotransposon protein, putative, unclassified
LOC_Os10g01240OsAffx.20819.1.S1_at11/1110+144062..144352VQ motif family protein
LOC_Os10g01250NANA10+149922..150228hypothetical protein
LOC_Os10g01260OsAffx.8585.1.S1_at11/1110+153666..155744retrotransposon, putative, centromere-specific
LOC_Os10g01260Os.52447.1.S1_x_at1/1110+153666..155744retrotransposon, putative, centromere-specific
LOC_Os10g01274OsAffx.30220.2.S1_x_at11/1110+159237..168736retrotransposon protein, putative, unclassified
LOC_Os10g01274OsAffx.30220.1.S1_at11/1110+159237..168736retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20819.1.S1_at--503--4191Chr10:144116..144140 (25 bp)
CCCTCAGACGGCGAAGTGTACGTGG
LOC_Os10g01240
OsAffx.20819.1.S1_at--378--8371Chr10:144125..144149 (25 bp)
GGCGAAGTGTACGTGGTCCACCCCA
LOC_Os10g01240
OsAffx.20819.1.S1_at--373--9271Chr10:144190..144214 (25 bp)
TCCTCCTGTCGCCAACAATAATGCT
LOC_Os10g01240
OsAffx.20819.1.S1_at--845--8711Chr10:144196..144220 (25 bp)
TGTCGCCAACAATAATGCTAATGTG
LOC_Os10g01240
OsAffx.20819.1.S1_at--406--2951Chr10:144215..144239 (25 bp)
AATGTGGCAGCGCAGCATAATAATC
LOC_Os10g01240
OsAffx.20819.1.S1_at--727--5071Chr10:144221..144245 (25 bp)
GCAGCGCAGCATAATAATCGTCCGT
LOC_Os10g01240
OsAffx.20819.1.S1_at--738--4111Chr10:144225..144249 (25 bp)
CGCAGCATAATAATCGTCCGTCTCA
LOC_Os10g01240
OsAffx.20819.1.S1_at--884--4951Chr10:144229..144253 (25 bp)
GCATAATAATCGTCCGTCTCAACAA
LOC_Os10g01240
OsAffx.20819.1.S1_at--50--4031Chr10:144243..144267 (25 bp)
CGTCTCAACAACACATGAGCAGCAA
LOC_Os10g01240
OsAffx.20819.1.S1_at--351--3091Chr10:144272..144296 (25 bp)
AATAATAATGGCAGCGTCACGACGC
LOC_Os10g01240
OsAffx.20819.1.S1_at--708--311Chr10:144276..144300 (25 bp)
ATAATGGCAGCGTCACGACGCTGGG
LOC_Os10g01240
Target Sequence 
CCCTCAGACGGCGAAGTGTACGTGGTCCACCCCACCCACTTCCGCACCGTCGTCCAGCAGCTCACCGGTGCACCTCCTCC
TGTCGCCAACAATAATGCTAATGTGGCAGCGCAGCATAATAATCGTCCGTCTCAACAACACATGAGCAGCAACAACAATA
ATAATGGCAGCGTCACGACGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis