Browse Element(s) Details


OsAffx.20866.1.S1_at

Description gb:XM_354423.1
DB_XREF= gi:35191256
GEN=OSJNBb0011E04.18
TID=OsAffx.20866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2910011/11SAM domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29050NANA8+17660685..17661412retrotransposon protein, putative, unclassified
LOC_Os08g29060OsAffx.29419.3.S1_at1/118+17663805..17665680retrotransposon protein, putative, unclassified
LOC_Os08g29070OsAffx.20387.1.S1_x_at1/118+17665942..17667252retrotransposon protein, putative, unclassified
LOC_Os08g29080OsAffx.30486.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.29222.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.31069.1.S1_x_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29090OsAffx.20867.1.S1_at10/118+17679322..17680496hypothetical protein
LOC_Os08g29090OsAffx.20867.1.S1_x_at10/118+17679322..17680496hypothetical protein
LOC_Os08g29100Os.33962.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100Os.33962.1.S2_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100OsAffx.20866.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29110Os.35567.1.S1_at10/118+17685599..17687678Thioredoxin family protein, expressed
LOC_Os08g29124Os.16065.2.S1_x_at11/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.5972.1.S1_at10/118+17689525..17705293expressed protein
LOC_Os08g29124Os.16065.1.S1_at9/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.14555.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.9687.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29140OsAffx.5973.1.S1_at11/118+17709072..17709728hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20866.1.S1_at--253--4131Chr08:17684467..17684491 (25 bp)
CGCATCGATTCCAAGGTATTCCACC
LOC_Os08g29100
OsAffx.20866.1.S1_at--931--3351Chr08:17684436..17684460 (25 bp)
CACGCCTGGATCAGTGGATCTCATT
LOC_Os08g29100
OsAffx.20866.1.S1_at--686--9591Chr08:17684416..17684440 (25 bp)
TCATTCCACCAATCCCCAGTTAGGT
LOC_Os08g29100
OsAffx.20866.1.S1_at--892--3071Chr08:17684362..17684386 (25 bp)
AATCAGCGGAATCTGTAGCTTTTTT
LOC_Os08g29100
OsAffx.20866.1.S1_at--916--10811Chr08:17684338..17684362 (25 bp)
TTGGGCGTGTGATTGCAAGCTGCTC
LOC_Os08g29100
OsAffx.20866.1.S1_at--96--1771Chr08:17684302..17684326 (25 bp)
ACCGTCTAGCCTAAGCCGTAATTTG
LOC_Os08g29100
OsAffx.20866.1.S1_at--1029--7651Chr08:17684276..17684300 (25 bp)
GGGATTTCAGATGCGGCGTTCTTTG
LOC_Os08g29100
OsAffx.20866.1.S1_at--508--4911Chr08:17684245..17684269 (25 bp)
GCTTCCTCTTTTGCTTTGCGAGACT
LOC_Os08g29100
OsAffx.20866.1.S1_at--441--3671Chr08:17684232..17684256 (25 bp)
CTTTGCGAGACTGCGGTAGCTAGCG
LOC_Os08g29100
OsAffx.20866.1.S1_at--688--9331Chr08:17684185..17684209 (25 bp)
TCGCCGGCGACTTTTGTGTGACATG
LOC_Os08g29100
OsAffx.20866.1.S1_at--392--2051Chr08:17684176..17684200 (25 bp)
ACTTTTGTGTGACATGCGTGCTCTT
LOC_Os08g29100
Target Sequence 
CGCATCGATTCCAAGGTATTCCACCGCCCTCCACGCCTGGATCAGTGGATCTCATTCCACCAATCCCCAGTTAGGTCCGC
CCCCTGCTGCAAGGGTCGGGGGAGAAATCAGCGGAATCTGTAGCTTTTTTTGGGCGTGTGATTGCAAGCTGCTCGCGGCT
GCTGCACCGTCTAGCCTAAGCCGTAATTTGGGGGATTTCAGATGCGGCGTTCTTTGTGCCGCGCTTCCTCTTTTGCTTTG
CGAGACTGCGGTAGCTAGCGTGGCGCGCTGGAGTACCCTCCCTCGCCGGCGACTTTTGTGTGACATGCGTGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis