Browse Element(s) Details


OsAffx.20867.1.S1_x_at

Description gb:XM_354422.1
DB_XREF= gi:35191244
TID=OsAffx.20867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2909010/11hypothetical protein
LOC_Os01g517102/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29050NANA8+17660685..17661412retrotransposon protein, putative, unclassified
LOC_Os08g29060OsAffx.29419.3.S1_at1/118+17663805..17665680retrotransposon protein, putative, unclassified
LOC_Os08g29070OsAffx.20387.1.S1_x_at1/118+17665942..17667252retrotransposon protein, putative, unclassified
LOC_Os08g29080OsAffx.30486.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.29222.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.31069.1.S1_x_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29090OsAffx.20867.1.S1_at10/118+17679322..17680496hypothetical protein
LOC_Os08g29090OsAffx.20867.1.S1_x_at10/118+17679322..17680496hypothetical protein
LOC_Os08g29100Os.33962.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100Os.33962.1.S2_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100OsAffx.20866.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29110Os.35567.1.S1_at10/118+17685599..17687678Thioredoxin family protein, expressed
LOC_Os08g29124Os.16065.2.S1_x_at11/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.5972.1.S1_at10/118+17689525..17705293expressed protein
LOC_Os08g29124Os.16065.1.S1_at9/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.14555.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.9687.1.S1_at1/118+17689525..17705293expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20867.1.S1_x_at--322--5932Chr08:17679352..17679376 (25 bp)
GAGCATCGTGTATTACGTGCCATCA
LOC_Os08g29090
OsAffx.20867.1.S1_x_at--772--10212Chr08:17679362..17679386 (25 bp)
TATTACGTGCCATCAAAGCTTTGAG
LOC_Os08g29090
OsAffx.20867.1.S1_x_at--26--5971Chr08:17679384..17679408 (25 bp)
GAGAACTGAGACTTCAACGTTTTTC
LOC_Os08g29090
OsAffx.20867.1.S1_x_at--620--1971Chr08:17679388..17679412 (25 bp)
ACTGAGACTTCAACGTTTTTCCTGT
LOC_Os08g29090
OsAffx.20867.1.S1_x_at--314--8851Chr08:17679390..17679414 (25 bp)
TGAGACTTCAACGTTTTTCCTGTTA
LOC_Os08g29090
OsAffx.20867.1.S1_x_at--173--5191Chr08:17679393..17679417 (25 bp)
GACTTCAACGTTTTTCCTGTTAATG
LOC_Os08g29090
OsAffx.20867.1.S1_x_at--99--3671Chr08:17679395..17679419 (25 bp)
CTTCAACGTTTTTCCTGTTAATGCG
LOC_Os08g29090
OsAffx.20867.1.S1_x_at--136--3171Chr08:17679398..17679422 (25 bp)
CAACGTTTTTCCTGTTAATGCGTGT
LOC_Os08g29090
OsAffx.20867.1.S1_x_at--414--4031Chr08:17679401..17679425 (25 bp)
CGTTTTTCCTGTTAATGCGTGTTGA
LOC_Os08g29090
OsAffx.20867.1.S1_x_at--675--9251Chr08:17679407..17679429 (23 bp)
TCCTGTTAATGCGTGTTGAAAAGTA
LOC_Os08g29090
OsAffx.20867.1.S1_x_at--339--9771NONE
TAATGCGTGTTGAAAAGTACAAGAT
NONE
Target Sequence 
GAGCATCGTGTATTACGTGCCATCAAAGCTTTGAGAACTGAGACTTCAACGTTTTTCCTGTTAATGCGTGTTGAAAAGTA
CAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20867.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis