Browse Element(s) Details


OsAffx.2103.1.S1_at

Description tigr:9629.m02691
TID=OsAffx.2103.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2810911/11hypothetical protein
LOC_Os01g2808911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28089OsAffx.2103.1.S1_at11/111+16049681..16051378hypothetical protein
LOC_Os01g28100OsAffx.23426.1.S1_at11/111+16053088..16053664hypothetical protein
LOC_Os01g28109OsAffx.2103.1.S1_at11/111+16066753..16068450hypothetical protein
LOC_Os01g28120OsAffx.23426.1.S1_at11/111+16070160..16070736hypothetical protein
LOC_Os01g28130OsAffx.25367.1.S1_at1/111+16074173..16080352retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2103.1.S1_at--418--1932Chr01:16067328..16067352 (25 bp)
ACGGACACTATCTACTATAATGGCA
LOC_Os01g28109
OsAffx.2103.1.S1_at--1032--5172Chr01:16067306..16067330 (25 bp)
GCAAGGTCTACTACGGTGTGGCCAT
LOC_Os01g28109
OsAffx.2103.1.S1_at--613--6372Chr01:16067244..16067268 (25 bp)
GATCCTAATTTTTATATCGAGCCAG
LOC_Os01g28109
OsAffx.2103.1.S1_at--156--2292Chr01:16067194..16067218 (25 bp)
AAATGGAACGGCGACGGAACTGCAA
LOC_Os01g28109
OsAffx.2103.1.S1_at--882--5452Chr01:16067178..16067202 (25 bp)
GAACTGCAAGCGGTAGGACAACAAA
LOC_Os01g28109
OsAffx.2103.1.S1_at--1094--1132Chr01:16067151..16067175 (25 bp)
AGTCCGAGCAGTTCTAACGAGTCCG
LOC_Os01g28109
OsAffx.2103.1.S1_at--58--4832Chr01:16067101..16067125 (25 bp)
GCTAACCTGGCTAACGAGTATCTTC
LOC_Os01g28109
OsAffx.2103.1.S1_at--148--8992Chr01:16066997..16067021 (25 bp)
TGAAGCTGAACTGGCTGGACGGTCT
LOC_Os01g28109
OsAffx.2103.1.S1_at--919--252Chr01:16066862..16066886 (25 bp)
ATATGCCGCTGGGTATGTCGTTCTT
LOC_Os01g28109
OsAffx.2103.1.S1_at--464--4032Chr01:16066844..16066868 (25 bp)
CGTTCTTGTCGAGTTTTGTGTTCAT
LOC_Os01g28109
OsAffx.2103.1.S1_at--448--2532Chr01:16066807..16066831 (25 bp)
AACTCGAAGCGGCATCGGGTTCTCC
LOC_Os01g28109
Target Sequence 
ACGGACACTATCTACTATAATGGCAAGGTCTACTACGGTGTGGCCATGAGGGGGGGCCTGAAAATCTTCAACAAGGAGGA
CAACGATCCTAATTTTTATATCGAGCCAGACAACAAGAAGGAAAATGAAAACAAAAATGGAACGGCGACGGAACTGCAAG
CGGTAGGACAACAAAAAAGTCCGAGCAGTTCTAACGAGTCCGAACACAATGGAGAAAAGAAGGGAAAGCTAACCTGGCTA
ACGAGTATCTTCGAGAAGAAGGGCGGCGAAAAGGTAAAGCAAGACAACAAACTAACAGCAGAAAAAGAACTAAAGGACAA
ACTGGAGAGGATGAAGCTGAACTGGCTGGACGGTCTTCACGCCTTCTTCACGGCGGTGGTGTTCCTGTCCGTTGCGTTCA
GCGACGTGGGGCTCCAGAGATGCCTCTTCCCGGACGCCGGGCACGACACCATGGAGCTGCTCAAGAATATGCCGCTGGGT
ATGTCGTTCTTGTCGAGTTTTGTGTTCATGATCTTCCCCACAACTCGAAGCGGCATCGGGTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis