Browse Element(s) Details


OsAffx.21102.2.S1_x_at

Description gb:NM_193999.1
DB_XREF= gi:34915081
GEN=P0514H03.17
TID=OsAffx.21102.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0514H03.17 (P0514H03.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2566011/11hypothetical protein
LOC_Os03g580403/11Glutamate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25630OsAffx.23393.1.S1_at11/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.2.S1_x_at3/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.1.S2_at2/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25640Os.47130.4.A1_x_at4/111+14516633..14516956retrotransposon protein, putative, unclassified
LOC_Os01g25650NANA1+14518061..14525452retrotransposon protein, putative, unclassified
LOC_Os01g25660OsAffx.21102.2.S1_x_at11/111+14526784..14527988hypothetical protein
LOC_Os01g25660Os.5406.1.S1_at1/111+14526784..14527988hypothetical protein
LOC_Os01g25670Os.47463.1.S1_x_at5/111+14533588..14534791transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25670Os.14491.2.S1_x_at3/111+14533588..14534791transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25679Os.45173.1.S1_x_at3/111+14538179..14542456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25679OsAffx.20329.1.S1_at3/111+14538179..14542456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25679OsAffx.22385.1.S1_x_at1/111+14538179..14542456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25688Os.46862.1.S1_at2/111+14544721..14547162retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25700NANA1+14549702..14552729transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21102.2.S1_x_at--685--931Chr01:14527927..14527951 (25 bp)
AGGCAGAGGCATACGCGGGCGGCGA
LOC_Os01g25660
OsAffx.21102.2.S1_x_at--23--6211Chr01:14527904..14527928 (25 bp)
GAGGCTGAGGCTGCCGTGCACGCGC
LOC_Os01g25660
OsAffx.21102.2.S1_x_at--507--3531Chr01:14527797..14527867 (25 bp)
CATGCCCGCCGATCGGAGATGGAGT
LOC_Os01g25660
OsAffx.21102.2.S1_x_at--916--4231Chr01:14527789..14527859 (25 bp)
CCGATCGGAGATGGAGTTGGCCTCA
LOC_Os01g25660
OsAffx.21102.2.S1_x_at--790--8051Chr01:14527783..14527807 (25 bp)
GGAGATGGAGTTGGCCTCAGCGGCG
LOC_Os01g25660
OsAffx.21102.2.S1_x_at--46--7551Chr01:14527758..14527782 (25 bp)
GTGGCGGAGGCAGACATGCGCCGCG
LOC_Os01g25660
OsAffx.21102.2.S1_x_at--662--7591Chr01:14527720..14527744 (25 bp)
GGGCAGACCTACATGACCCGCGGGT
LOC_Os01g25660
OsAffx.21102.2.S1_x_at--177--2111Chr01:14527710..14527734 (25 bp)
ACATGACCCGCGGGTTCAGGGATGA
LOC_Os01g25660
OsAffx.21102.2.S1_x_at--980--2912Chr03:32977378..32977402 (25 bp)
AAGGAGATGTGCAGGAGCCACCACT
LOC_Os03g58040
OsAffx.21102.2.S1_x_at--416--1312Chr03:32977374..32977398 (25 bp)
AGATGTGCAGGAGCCACCACTGCGA
LOC_Os03g58040
OsAffx.21102.2.S1_x_at--600--8692Chr03:32977371..32977395 (25 bp)
TGTGCAGGAGCCACCACTGCGACCT
LOC_Os03g58040
Target Sequence 
AGGCAGAGGCATACGCGGGCGGCGAGGCTGAGGCTGCCGTGCACGCGCGCTCGCCGTCGCCGGAGCTCCAGCACGGCCAC
CTCCCATGCCCGCCGATCGGAGATGGAGTTGGCCTCAGCGGCGGTGGCGGAGGCAGACATGCGCCGCGGCGGCGGCGACA
GGGGCAGACCTACATGACCCGCGGGTTCAGGGATGAGAAGGAGATGTGCAGGAGCCACCACTGCGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21102.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis