Browse Element(s) Details


OsAffx.21257.1.S1_at

Description gb:NM_193300.1
DB_XREF= gi:34913683
GEN=OSJNBa0062A24.13
TID=OsAffx.21257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0062A24.13 (OSJNBa0062A24.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g268204/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26810NANA11+14872287..14872796hypothetical protein
LOC_Os11g26820OsAffx.21257.1.S1_at4/1111+14894386..14900805retrotransposon protein, putative, unclassified
LOC_Os11g26820Os.6016.1.A1_s_at1/1111+14894386..14900805retrotransposon protein, putative, unclassified
LOC_Os11g26830OsAffx.31145.1.S1_at11/1111+14904172..14909002ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein
LOC_Os11g26840NANA11+14918363..14919099hypothetical protein
LOC_Os11g26850Os.8240.1.S1_at10/1111+14919682..14922705Adenosylhomocysteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21257.1.S1_at--659--9051Chr01:20311816..20312088 (25 bp)
TGCAGTGTGTGTATCGCAGGGATTC
NONE
OsAffx.21257.1.S1_at--34--7471Chr01:20311822..20312094 (25 bp)
GTGTGTATCGCAGGGATTCGGATCA
NONE
OsAffx.21257.1.S1_at--559--10131Chr01:20311827..20312099 (25 bp)
TATCGCAGGGATTCGGATCAGGTGA
NONE
OsAffx.21257.1.S1_at--1037--6571Chr01:20312084..20312108 (25 bp)
GATTCGGATCAGGTGAAATTGCTAT
NONE
OsAffx.21257.1.S1_at--89--6451Chr01:20312090..20312114 (25 bp)
GATCAGGTGAAATTGCTATTGTTAC
NONE
OsAffx.21257.1.S1_at--512--10733Chr11:14900334..14900358 (25 bp)
TTGCTATTGTTACTGCAACTTTAGC
LOC_Os11g26820
OsAffx.21257.1.S1_at--1124--9013Chr11:14900347..14900371 (25 bp)
TGCAACTTTAGCAGTAGCACCTGAT
LOC_Os11g26820
OsAffx.21257.1.S1_at--345--2052Chr11:14900351..14900375 (25 bp)
ACTTTAGCAGTAGCACCTGATCTGA
LOC_Os11g26820
OsAffx.21257.1.S1_at--654--10452Chr11:14900354..14900378 (25 bp)
TTAGCAGTAGCACCTGATCTGACCA
LOC_Os11g26820
OsAffx.21257.1.S1_at--993--6951Chr01:20312128..20312152 (25 bp)
GTAGCACCTGATCTGACCATCCACG
NONE
OsAffx.21257.1.S1_at--225--1771Chr01:20312133..20312157 (25 bp)
ACCTGATCTGACCATCCACGAAGCA
NONE
Target Sequence 
TGCAGTGTGTGTATCGCAGGGATTCGGATCAGGTGAAATTGCTATTGTTACTGCAACTTTAGCAGTAGCACCTGATCTGA
CCATCCACGAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis