Browse Element(s) Details


OsAffx.31145.1.S1_at

Description tigr:9639.m02395
TID=OsAffx.31145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2683011/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26820OsAffx.21257.1.S1_at4/1111+14894386..14900805retrotransposon protein, putative, unclassified
LOC_Os11g26820Os.6016.1.A1_s_at1/1111+14894386..14900805retrotransposon protein, putative, unclassified
LOC_Os11g26830OsAffx.31145.1.S1_at11/1111+14904172..14909002ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein
LOC_Os11g26840NANA11+14918363..14919099hypothetical protein
LOC_Os11g26850Os.8240.1.S1_at10/1111+14919682..14922705Adenosylhomocysteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31145.1.S1_at--817--2531Chr11:14905168..14905192 (25 bp)
AACTCTGTCAGGCACCATTGCTACT
LOC_Os11g26830
OsAffx.31145.1.S1_at--693--7111Chr11:14905138..14905162 (25 bp)
GTCAGAGAGGATTCCAGCCATCCGT
LOC_Os11g26830
OsAffx.31145.1.S1_at--563--1691Chr11:14905123..14905147 (25 bp)
AGCCATCCGTGACAATCCAACAAAT
LOC_Os11g26830
OsAffx.31145.1.S1_at--859--10791Chr11:14905070..14905094 (25 bp)
TTGTCTCTTCACCTGTAGGAACAAA
LOC_Os11g26830
OsAffx.31145.1.S1_at--852--9311Chr11:14905026..14905050 (25 bp)
TCCCAGTCCCAGTCAAGTATGCAGA
LOC_Os11g26830
OsAffx.31145.1.S1_at--731--5531Chr11:14904899..14904923 (25 bp)
GAAACAACTCTGTGGACTCGAGCAA
LOC_Os11g26830
OsAffx.31145.1.S1_at--77--7531Chr11:14904617..14904912 (25 bp)
GTGGACTCGAGCAATCAGATACTAC
LOC_Os11g26830
OsAffx.31145.1.S1_at--926--3431Chr11:14904602..14904626 (25 bp)
CAGATACTACAGATATGCCAGCATA
LOC_Os11g26830
OsAffx.31145.1.S1_at--19--5311Chr11:14904384..14904408 (25 bp)
GAAGGAACTCTTGCTCAAGGTGACA
LOC_Os11g26830
OsAffx.31145.1.S1_at--254--6531Chr11:14904346..14904370 (25 bp)
GATTTGTTCAATCTTACTCACTAGT
LOC_Os11g26830
OsAffx.31145.1.S1_at--991--51Chr11:14904241..14904265 (25 bp)
ATTGAGCCTTGAACTTGAGCAGACG
LOC_Os11g26830
Target Sequence 
AACTCTGTCAGGCACCATTGCTACTGCATCGTCAGAGAGGATTCCAGCCATCCGTGACAATCCAACAAATGCAATTCCAA
TCGCCTTTGCTCCCCATCTTGTCTCTTCACCTGTAGGAACAAATGCTGTTGCTGCAGTTTGCTCCCAGTCCCAGTCAAGT
ATGCAGATCACAATTGGCACTGATTTAGTAGATACAAGAAAAAGAAGAATGGAAACTCTTGATCAGATGGATGGTCGATC
GAAAAGGCTGAGTATACATGATTTGGCAGGAAACAACTCTGTGGACTCGAGCAATCAGATACTACAGATATGCCAGCATA
TGGGAGAACGGGAGTTGAAGGAAATTTTCCTACTTGAAGATAGAGAATACACTACTCCGTCAAGAGTGTGCGGAATTAGA
GTCATCAGAGAAGGAACTCTTGCTCAAGGTGACATTTTTTATGTTGTGATTTGTTCAATCTTACTCACTAGTACACTACA
CCAGGAACAACAATTGAGCCTTGAACTTGAGCAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis