Browse Element(s) Details


OsAffx.21292.1.S1_at

Description gb:NM_193175.1
DB_XREF= gi:34913433
GEN=P0702H08.4
TID=OsAffx.21292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0702H08.4 (P0702H08.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g433041/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43270Os.18776.1.S1_at11/116+26002185..26006063Protein kinase domain containing protein, expressed
LOC_Os06g43280Os.55135.1.S1_at11/116+26006061..26009416elongator component, putative, expressed
LOC_Os06g43290Os.46785.2.S1_x_at4/116+26011705..26015703retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43304Os.51066.1.S1_at11/116+26021270..26028243Cytochrome P450 family protein, expressed
LOC_Os06g43304OsAffx.21292.1.S1_at1/116+26021270..26028243Cytochrome P450 family protein, expressed
LOC_Os06g43320OsAffx.28078.1.S1_at1/116+26033893..26037159Cytochrome P450 family protein, expressed
LOC_Os06g43330NANA6+26047163..26050103retrotransposon protein, putative, unclassified
LOC_Os06g43340OsAffx.20387.1.S1_x_at1/116+26051062..26056937retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21292.1.S1_at--1005--3551Chr01:19384762..19384786 (25 bp)
CATCATCATGCTTGGACGAGGCCGA
NONE
OsAffx.21292.1.S1_at--1105--4031Chr01:19384740..19384764 (25 bp)
CGAGACGTCGTTGCCTTTTTCACGG
NONE
OsAffx.21292.1.S1_at--894--10411Chr01:19384694..19384718 (25 bp)
TTATATTGTCACCATCATCAGCGAT
NONE
OsAffx.21292.1.S1_at--932--6071Chr01:19383355..19383379 (25 bp)
GAGTATGGTATACCCTCACGTACAC
NONE
OsAffx.21292.1.S1_at--318--7031Chr01:19383336..19383360 (25 bp)
GTACACGGGTTATTTCCGTATGCGT
NONE
OsAffx.21292.1.S1_at--764--7677Chr12:12180805..12180824 (20 bp)
GGGTCAAGTGATTTCCAAAGTCCTA
NONE
OsAffx.21292.1.S1_at--1146--7251Chr01:19383254..19383278 (25 bp)
GTCCTACTTTCATTCTTACTTGGAG
NONE
OsAffx.21292.1.S1_at--805--1731Chr01:19383155..19383179 (25 bp)
ACCATCGTCTGCGAAGCCGAAGTAC
NONE
OsAffx.21292.1.S1_at--613--5332Chr06:17239076..17239099 (24 bp)
GAAGTACGCGGAGCCAAGTCGCCAG
NONE
OsAffx.21292.1.S1_at--113--80510Chr12:13332051..13332344 (25 bp)
GGAGATCTCGTCGAATACATTGACT
NONE
OsAffx.21292.1.S1_at--650--331Chr01:19382951..19383123 (25 bp)
ATACATTGACTACGATCTCATCCTC
NONE
Target Sequence 
CATCATCATGCTTGGACGAGGCCGAGACGTCGTTGCCTTTTTCACGGTCGCTCCCCCTGCCGGCTTAATTATATTGTCAC
CATCATCAGCGATGAAGTCGCACAAATACATTATATATTATTGGTATTACAAATTTAAACAAGTATATGCTATAGGTGTC
ATGGTTATGGATAAGACATACCTCCTATCCTACGACTTATGGAATATACGAGTATGGTATACCCTCACGTACACGGGTTA
TTTCCGTATGCGTAGTAGGAATCCGTTACAAATTATAAAAAATATCTCTACGGGTCAAGTGATTTCCAAAGTCCTACTTT
CATTCTTACTTGGAGATCAAGATGATCCACGGTATAAAAGGGACCCCGGGGAGGGGTGCAAGGCATCGAATCTCATCACC
AACACACCCACCATCGTCTGCGAAGCCGAAGTACGCGGAGCCAAGTCGCCAGGAGATCTCGTCGAATACATTGACTACGA
TCTCATCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis