Browse Element(s) Details


OsAffx.21393.1.S1_at

Description tigr:9629.m03998
TID=OsAffx.21393.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4179011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41740OsAffx.23625.1.S1_at11/111+23957292..23958085hypothetical protein
LOC_Os01g41750Os.24878.1.A1_at11/111+23958615..23962223Leucine Rich Repeat family protein, expressed
LOC_Os01g41760NANA1+23964090..23964416hypothetical protein
LOC_Os01g41770OsAffx.21394.1.S1_at11/111+23966834..23969695Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.2.S1_x_at11/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.1.S1_at10/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41790OsAffx.21393.1.S1_at11/111+23982858..23985164hypothetical protein
LOC_Os01g41800Os.20589.1.S1_at7/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41800Os.26891.1.A1_x_at1/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41810Os.22681.1.S1_at10/111+24000019..24002808Cytochrome P450 family protein, expressed
LOC_Os01g41810Os.26891.1.A1_x_at2/111+24000019..24002808Cytochrome P450 family protein, expressed
LOC_Os01g41820Os.26891.1.A1_x_at10/111+24009122..24012243Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21393.1.S1_at--471--9191Chr01:23984037..23984061 (25 bp)
TGCCAGCAATGAACATCTTCCTCAG
LOC_Os01g41790
OsAffx.21393.1.S1_at--248--1231Chr01:23984014..23984038 (25 bp)
AGATTGTACCGGAATTCCCTCTTGT
LOC_Os01g41790
OsAffx.21393.1.S1_at--912--6371Chr01:23983979..23984003 (25 bp)
GATCCCAATGTCATCTACTTCACAT
LOC_Os01g41790
OsAffx.21393.1.S1_at--199--4451Chr01:23983922..23983946 (25 bp)
GCCTTCGTTGCACTTGACATGGTAA
LOC_Os01g41790
OsAffx.21393.1.S1_at--1071--5691Chr01:23983893..23983917 (25 bp)
GACTCTAGGCCTGCGAAACACTTAT
LOC_Os01g41790
OsAffx.21393.1.S1_at--828--3191Chr01:23983806..23983830 (25 bp)
CAATGAGCCATTCCTACCTTTTGAA
LOC_Os01g41790
OsAffx.21393.1.S1_at--996--3711Chr01:23983773..23983797 (25 bp)
CTACCTGAATTTGGATGCGGCTTAC
LOC_Os01g41790
OsAffx.21393.1.S1_at--808--4491Chr01:23983078..23983102 (25 bp)
GCCGGGCAGGGCTTGATCACTTAAT
LOC_Os01g41790
OsAffx.21393.1.S1_at--387--371Chr01:23983063..23983087 (25 bp)
ATCACTTAATCCCAGGTATTCCACA
LOC_Os01g41790
OsAffx.21393.1.S1_at--356--6631Chr01:23982988..23983012 (25 bp)
GTTGTGATGGCCTATGCGGTCATGC
LOC_Os01g41790
OsAffx.21393.1.S1_at--1007--2391Chr01:23982918..23982942 (25 bp)
AAAAACCTACTACACGCTGCAAGAC
LOC_Os01g41790
Target Sequence 
TGCCAGCAATGAACATCTTCCTCAGATTGTACCGGAATTCCCTCTTGTTGACATGGAAGATCCCAATGTCATCTACTTCA
CATTGCCCCTGGAAGAAGGTTCTAATGATAAGGCAGCCTTCGTTGCACTTGACATGGTAAGGAGGACTCTAGGCCTGCGA
AACACTTATACATTAAGAAGCACCTTGAAACCTGGTGACGACAACAGCTCAACCTCCTGCAACCTCTTTGGCAATGAGCC
ATTCCTACCTTTTGAATTCTCCAACTACCTGAATTTGGATGCGGCTTACAACAGNNNNAAGATTGTTGTTTGGAGCCTTG
GACGTGGCAGCCGGGCAGGGCTTGATCACTTAATCCCAGGTATTCCACAGGGGGACGAGGAGCACGATCGCGGTGAATCA
ACCGGCAGGGTGGCACAGAGTTGTGATGGCCTATGCGGTCATGCGGCGCGCGGAGGAATTGGGAACGATGCGTGCAGCAC
CGAAGGCGCAAAAACCTACTACACGCTGCAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis