Browse Element(s) Details


OsAffx.22314.1.S1_x_at

Description gb:NM_187318.1
DB_XREF= gi:34901721
GEN=P0434A03.26
TID=OsAffx.22314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0434A03.26 (P0434A03.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g297104/11hypothetical protein
LOC_Os01g235801/11Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g215001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29660OsAffx.22317.1.S1_at11/117+17437850..17438140hypothetical protein
LOC_Os07g29670NANA7+17438877..17442520hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_x_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.28662.1.S1_at10/117+17443413..17448062hypothetical protein
LOC_Os07g29700Os.10046.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29700OsAffx.10906.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29710OsAffx.22314.2.S1_at11/117+17460700..17460948hypothetical protein
LOC_Os07g29710OsAffx.22314.1.S1_x_at4/117+17460700..17460948hypothetical protein
LOC_Os07g29720OsAffx.28663.1.S1_at11/117+17469440..17470378hypothetical protein
LOC_Os07g29730NANA7+17473093..17477552transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g29740Os.47463.1.S1_x_at2/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29740Os.14491.2.S1_x_at1/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0010248biological_processestablishment and/or maintenance of transmembrane electrochemical gradient
GO:0005739cellular_componentmitochondrion
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0010008cellular_componentendosome membrane
GO:0009678molecular_functionhydrogen-translocating pyrophosphatase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22314.1.S1_x_at--762--8211Chr07:17460731..17460755 (25 bp)
GGCTAAATCCGGTGGCTACCGACGA
LOC_Os07g29710
OsAffx.22314.1.S1_x_at--1010--3031Chr07:17460736..17460760 (25 bp)
AATCCGGTGGCTACCGACGATGTGG
LOC_Os07g29710
OsAffx.22314.1.S1_x_at--159--971Chr07:17460761..17460785 (25 bp)
AGGACGATGGCGACAGTGCGAAGGA
LOC_Os07g29710
OsAffx.22314.1.S1_x_at--497--3451Chr07:17460774..17460798 (25 bp)
CAGTGCGAAGGACGGCGGTGGTCAT
LOC_Os07g29710
OsAffx.22314.1.S1_x_at--997--8571Chr07:17460792..17461022 (25 bp)
TGGTCATAGGGCTGTTGAAGGATAT
NONE
OsAffx.22314.1.S1_x_at--157--3571Chr07:17460796..17461026 (25 bp)
CATAGGGCTGTTGAAGGATATATTT
NONE
OsAffx.22314.1.S1_x_at--741--6511Chr07:17461018..17461042 (25 bp)
GATATATTTTGGCTGGAATGGCTAA
NONE
OsAffx.22314.1.S1_x_at--1146--83318Chr12:3199383..3199836 (25 bp)
GGCTGGAATGGCTAAAATTTGGCTT
NONE
OsAffx.22314.1.S1_x_at--473--3112Chr07:17461043..17461067 (25 bp)
AATTTGGCTTAGAGAGTCATTTGGA
NONE
OsAffx.22314.1.S1_x_at--929--10431Chr07:17461051..17461075 (25 bp)
TTAGAGAGTCATTTGGAGAAGCTGT
NONE
OsAffx.22314.1.S1_x_at--795--1154Chr09:9370395..9370414 (20 bp)
AGTCATTTGGAGAAGCTGTTGGAGA
NONE
Target Sequence 
GGCTAAATCCGGTGGCTACCGACGATGTGGAGGACGATGGCGACAGTGCGAAGGACGGCGGTGGTCATAGGGCTGTTGAA
GGATATATTTTGGCTGGAATGGCTAAAATTTGGCTTAGAGAGTCATTTGGAGAAGCTGTTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22314.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis