Browse Element(s) Details


OsAffx.16479.1.S1_at

Description tigr:9635.m02894
TID=OsAffx.16479.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2968411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29660OsAffx.22317.1.S1_at11/117+17437850..17438140hypothetical protein
LOC_Os07g29670NANA7+17438877..17442520hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_x_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.28662.1.S1_at10/117+17443413..17448062hypothetical protein
LOC_Os07g29700Os.10046.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29700OsAffx.10906.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29710OsAffx.22314.2.S1_at11/117+17460700..17460948hypothetical protein
LOC_Os07g29710OsAffx.22314.1.S1_x_at4/117+17460700..17460948hypothetical protein
LOC_Os07g29720OsAffx.28663.1.S1_at11/117+17469440..17470378hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16479.1.S1_at--482--651Chr07:17447760..17447784 (25 bp)
ATGATAAGCCATCAGGACCATTGGA
LOC_Os07g29684
OsAffx.16479.1.S1_at--395--971Chr07:17447773..17447797 (25 bp)
AGGACCATTGGAAATGCTCCCCAAG
LOC_Os07g29684
OsAffx.16479.1.S1_at--1102--3571Chr07:17447778..17447802 (25 bp)
CATTGGAAATGCTCCCCAAGCTCAA
LOC_Os07g29684
OsAffx.16479.1.S1_at--228--9311Chr07:17447790..17447814 (25 bp)
TCCCCAAGCTCAACTTAAGCATGGG
LOC_Os07g29684
OsAffx.16479.1.S1_at--584--771Chr07:17447810..17447834 (25 bp)
ATGGGGGACTCCTGCTCCAGTGAGC
LOC_Os07g29684
OsAffx.16479.1.S1_at--1138--1111Chr07:17447828..17447892 (25 bp)
AGTGAGCCCACCTATGAGCCACCAG
LOC_Os07g29684
OsAffx.16479.1.S1_at--1058--4351Chr07:17447835..17447899 (25 bp)
CCACCTATGAGCCACCAGTGGAAGA
LOC_Os07g29684
OsAffx.16479.1.S1_at--797--4411Chr07:17447885..17447909 (25 bp)
GCCACCAGTGGAAGAGAAGCTAGCT
LOC_Os07g29684
OsAffx.16479.1.S1_at--483--9111Chr07:17447909..17447933 (25 bp)
TGCTGAAGCTGTGAAGATATCAGGA
LOC_Os07g29684
OsAffx.16479.1.S1_at--540--2351Chr07:17447952..17447976 (25 bp)
AAAGCCGACAAGGAGTATCCTACTC
LOC_Os07g29684
OsAffx.16479.1.S1_at--186--8031Chr07:17447963..17447987 (25 bp)
GGAGTATCCTACTCCTCCAGTTAGC
LOC_Os07g29684
Target Sequence 
ATGATAAGCCATCAGGACCATTGGAAATGCTCCCCAAGCTCAACTTAAGCATGGGGGACTCCTGCTCCAGTGAGCCCACC
TATGAGCCACCAGTGGAAGAGAAGCTAGCTGCTGAAGCTGTGAAGATATCAGGAGAAGAGAAGATGCTGATCAAAGCCGA
CAAGGAGTATCCTACTCCTCCAGTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis