Browse Element(s) Details


Os.28775.1.S1_at

Description gb:CF311984
DB_XREF= gi:33683745
DB_XREF=ABF--07-H23.g1
CLONE=ABF--07-H23
TID=Os.28775.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434A03.10 (P0434A03.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2963011/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29594OsAffx.30389.2.S1_at4/117+17394303..17394710hypothetical protein
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29610Os.12013.3.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_a_at9/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29620Os.137.1.S1_at11/117+17408334..17412155Serine carboxypeptidase-like precursor, putative, expressed
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29660OsAffx.22317.1.S1_at11/117+17437850..17438140hypothetical protein
LOC_Os07g29670NANA7+17438877..17442520hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_x_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.28662.1.S1_at10/117+17443413..17448062hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28775.1.S1_at--421--5151Chr07:17420643..17420667 (25 bp)
GCAACGGCAAGAACTGTCGGTCATC
LOC_Os07g29630
Os.28775.1.S1_at--135--7191Chr07:17420628..17420652 (25 bp)
GTCGGTCATCTGTCAAAAAGTGCTG
LOC_Os07g29630
Os.28775.1.S1_at--1149--5551Chr07:17420575..17420599 (25 bp)
GAAAGCTCCAGAATTGGCTGCCACC
LOC_Os07g29630
Os.28775.1.S1_at--306--9051Chr07:17420310..17420334 (25 bp)
TGCAGTTGATTCAGCTTTGGACTCT
LOC_Os07g29630
Os.28775.1.S1_at--1153--1551Chr07:17420212..17420236 (25 bp)
AGCTACCCGATGCTGTGAGGAAACA
LOC_Os07g29630
Os.28775.1.S1_at--756--1531Chr07:17420175..17420199 (25 bp)
AGCTTCAACAAGCAGGGTCCCAGAA
LOC_Os07g29630
Os.28775.1.S1_at--241--1351Chr07:17419815..17419839 (25 bp)
AGAGATCAGAGCACGGCTTGCTAAA
LOC_Os07g29630
Os.28775.1.S1_at--914--7631Chr07:17419766..17419790 (25 bp)
GGGAGTTCCCTAGATAACATCCAGA
LOC_Os07g29630
Os.28775.1.S1_at--1035--3691Chr07:17419736..17419760 (25 bp)
CTATGATAGATTGGCCTCGGTTGAC
LOC_Os07g29630
Os.28775.1.S1_at--99--4471Chr07:17419723..17419747 (25 bp)
GCCTCGGTTGACCAAGTTTGAACTA
LOC_Os07g29630
Os.28775.1.S1_at--516--2091Chr07:17419668..17419692 (25 bp)
ACATCCTGTATCTTGATCTGTCTAG
LOC_Os07g29630
Target Sequence 
GCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGA
ATTGGCTGCCACCATGCAAGNATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTG
ATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAG
ACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACA
AGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAAC
ATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAG
CAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis