Browse Element(s) Details


Os.12013.1.S1_a_at

Description gb:AK058326.1
DB_XREF= gi:32968344
TID=Os.12013.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434A03.6 (P0434A03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B11, full insert sequence.
FL= gb:AK058326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g296109/11Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29590OsAffx.10637.1.S1_s_at6/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.3.S1_s_at4/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.4.S1_s_at2/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29594OsAffx.30389.2.S1_at4/117+17394303..17394710hypothetical protein
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29610Os.12013.3.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_a_at9/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29620Os.137.1.S1_at11/117+17408334..17412155Serine carboxypeptidase-like precursor, putative, expressed
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12013.1.S1_a_at--690--9551Chr07:17406314..17406338 (25 bp)
TCTTTGCTAGGCTTCCACAGATATG
LOC_Os07g29610
Os.12013.1.S1_a_at--228--3691Chr07:17406315..17406339 (25 bp)
CTTTGCTAGGCTTCCACAGATATGG
LOC_Os07g29610
Os.12013.1.S1_a_at--41--2891Chr07:17406633..17406657 (25 bp)
AAGGGCACTGGCGAGCTGAGCTTTC
LOC_Os07g29610
Os.12013.1.S1_a_at--403--8631Chr07:17407678..17407702 (25 bp)
TGGGTCAGATAGTGTTGTACCAGAA
LOC_Os07g29610
Os.12013.1.S1_a_at--881--7691Chr07:17407679..17407703 (25 bp)
GGGTCAGATAGTGTTGTACCAGAAG
LOC_Os07g29610
Os.12013.1.S1_a_at--418--7811Chr07:17407680..17407704 (25 bp)
GGTCAGATAGTGTTGTACCAGAAGC
LOC_Os07g29610
Os.12013.1.S1_a_at--792--7111Chr07:17407681..17407705 (25 bp)
GTCAGATAGTGTTGTACCAGAAGCC
LOC_Os07g29610
Os.12013.1.S1_a_at--671--9631Chr07:17407682..17407706 (25 bp)
TCAGATAGTGTTGTACCAGAAGCCT
LOC_Os07g29610
Os.12013.1.S1_a_at--980--3431Chr07:17407683..17407707 (25 bp)
CAGATAGTGTTGTACCAGAAGCCTG
LOC_Os07g29610
Target Sequence 
TCTTTGCTAGGCTTCCACAGATATGGAAGAATTTTATGAACAAGGGCACTGGCGAGCTGAGCTTTCTGACCTGTTTCATG
AACTTTGCTGGTTCCATAGTAAGAGTGTTCACCAGCATCCAGGAGAAGACTCCCTTAAGTGTGATACTGGGATCTGCAAT
TGGCATTGTGATGAATGGTACGCTCTTGGGTCAGATAGTGTTGTACCAGAAGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12013.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis