Browse Element(s) Details


Os.26381.1.S1_x_at

Description gb:AK067434.1
DB_XREF= gi:32977452
TID=Os.26381.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434A03.5 (P0434A03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099F19, full insert sequence.
FL= gb:AK067434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2960011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29580OsAffx.28660.1.S1_at11/117+17373833..17374216hypothetical protein
LOC_Os07g29580OsAffx.28660.1.S1_x_at11/117+17373833..17374216hypothetical protein
LOC_Os07g29590OsAffx.10637.1.S1_s_at6/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.3.S1_s_at4/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.4.S1_s_at2/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29594OsAffx.30389.2.S1_at4/117+17394303..17394710hypothetical protein
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29610Os.12013.3.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_a_at9/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29620Os.137.1.S1_at11/117+17408334..17412155Serine carboxypeptidase-like precursor, putative, expressed
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26381.1.S1_x_at--1082--6091Chr07:17400727..17400751 (25 bp)
GAGTCTACTGAGTACACCATTCATT
LOC_Os07g29600
Os.26381.1.S1_x_at--502--1971Chr07:17400867..17400890 (24 bp)
ACTGTTGTGCAGTTTGCCTTCAGGA
LOC_Os07g29600
Os.26381.1.S1_x_at--498--4451Chr07:17400882..17400996 (25 bp)
GCCTTCAGGATTTTGGAGCATCGCA
LOC_Os07g29600
Os.26381.1.S1_x_at--738--5911Chr07:17400987..17401011 (25 bp)
GAGCATCGCAATTTGTTCGGGTCCT
LOC_Os07g29600
Os.26381.1.S1_x_at--698--6331Chr07:17401041..17401065 (25 bp)
GATGCATCGACAACTGGCTTTTCAG
LOC_Os07g29600
Os.26381.1.S1_x_at--406--7051Chr07:17401120..17401144 (25 bp)
GTAAAATAGAACTCGCAGCGCACCT
LOC_Os07g29600
Os.26381.1.S1_x_at--46--10211Chr07:17401149..17401173 (25 bp)
TATTTTCAGGCGAATACCCGTGCCC
LOC_Os07g29600
Os.26381.1.S1_x_at--1023--4531Chr07:17401170..17401194 (25 bp)
GCCCGCGGTCCGTATCATAAGTATA
LOC_Os07g29600
Os.26381.1.S1_x_at--769--7131Chr07:17401195..17401219 (25 bp)
GTCTTGTACACATAGGAGGCCTTTT
LOC_Os07g29600
Os.26381.1.S1_x_at--196--10391Chr07:17401219..17401243 (25 bp)
TTTTCTTCCCAGTCTTTGTGTGGAG
LOC_Os07g29600
Os.26381.1.S1_x_at--292--8671Chr07:17401235..17401259 (25 bp)
TGTGTGGAGCTATGTTCCAGCCGCA
LOC_Os07g29600
Target Sequence 
GAGTCTACTGAGTACACCATTCATTGACAACAATGACCTTTTTGAAACCGGAAATACAGGAGGCATGTCAAGAGATCTAA
TTAACAGAATCCCAAAGACCACATTCAGCGCTGCAACCAATCCTGATCAGGAAACTGATAACTGTTGTGCAGTTTGCCTT
CAGGATTTTGGAGCATCGCAATTTGTTCGGGTCCTGCCTCATTGCCAGCACACGTTCCACGCACGATGCATCGACAACTG
GCTTTTCAGGCACGCATCATGCCCGCTATGCAGGGCTGGTGTGCATATAGACCATATACATATGTAAAATAGAACTCGCA
GCGCACCTGGTGTATTTTCAGGCGAATACCCGTGCCCGCGGTCCGTATCATAAGTATAGTCTTGTACACATAGGAGGCCT
TTTTTTCTTCCCAGTCTTTGTGTGGAGCTATGTTCCAGCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26381.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis