Browse Element(s) Details


Os.12013.1.S1_at

Description gb:AK058326.1
DB_XREF= gi:32968344
TID=Os.12013.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434A03.6 (P0434A03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B11, full insert sequence.
FL= gb:AK058326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2961011/11Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29590OsAffx.10637.1.S1_s_at6/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.3.S1_s_at4/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.4.S1_s_at2/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29594OsAffx.30389.2.S1_at4/117+17394303..17394710hypothetical protein
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29610Os.12013.3.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_a_at9/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29620Os.137.1.S1_at11/117+17408334..17412155Serine carboxypeptidase-like precursor, putative, expressed
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12013.1.S1_at--793--6011Chr07:17407727..17407751 (25 bp)
GAGAGATTGAGCACAACTGCACAAC
LOC_Os07g29610
Os.12013.1.S1_at--770--1471Chr07:17407764..17407788 (25 bp)
AGAATGTTCATCTCTGTGTCCATCT
LOC_Os07g29610
Os.12013.1.S1_at--163--471Chr07:17407773..17407797 (25 bp)
ATCTCTGTGTCCATCTTCAGACAAG
LOC_Os07g29610
Os.12013.1.S1_at--1160--891Chr07:17407802..17407826 (25 bp)
AGGCTCCAGTGTATGAATTTCTTGC
LOC_Os07g29610
Os.12013.1.S1_at--146--8771Chr07:17407811..17407835 (25 bp)
TGTATGAATTTCTTGCAGAGTCGTG
LOC_Os07g29610
Os.12013.1.S1_at--503--7931Chr07:17407877..17407901 (25 bp)
GGATATCTTGCGTACTTAGTTTTAG
LOC_Os07g29610
Os.12013.1.S1_at--375--7491Chr07:17407968..17407992 (25 bp)
GTGGAAAAACTGTTCTCTTAACTCT
LOC_Os07g29610
Os.12013.1.S1_at--65--1971Chr07:17407976..17408000 (25 bp)
ACTGTTCTCTTAACTCTATGTTTGA
LOC_Os07g29610
Os.12013.1.S1_at--1064--9391Chr07:17408014..17408038 (25 bp)
TCGTCTGTTTATTTTTCAGGCATAA
LOC_Os07g29610
Os.12013.1.S1_at--141--3491Chr07:17408030..17408054 (25 bp)
CAGGCATAAATATTGTAAGCACGGG
LOC_Os07g29610
Os.12013.1.S1_at--188--7591Chr07:17408053..17408077 (25 bp)
GGGCTACATACAAAATCCAGAAAGT
LOC_Os07g29610
Target Sequence 
GAGAGATTGAGCACAACTGCACAACACAAGAAAAGGCAGAATGTTCATCTCTGTGTCCATCTTCAGACAAGCAAAAGGCT
CCAGTGTATGAATTTCTTGCAGAGTCGTGTGATGATGAAAAACGATGGGCACCATATACAGACTAGATATGGATATCTTG
CGTACTTAGTTTTAGCATTTAGAAGTGTCATGACTGATGTTAGATTATTGTTAGATTGCTGTACTGTGCAAGCTACTGAC
AGTGGAAAAACTGTTCTCTTAACTCTATGTTTGAGACTATTTTTTTATCGTCTGTTTATTTTTCAGGCATAAATATTGTA
AGCACGGGGCTACATACAAAATCCAGAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis