Browse Element(s) Details


Os.137.1.S1_at

Description gb:D17587.1
DB_XREF= gi:409581
GEN=cbp31
TID=Os.137.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.137 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for serine carboxypeptidase-like protein, complete cds.
PROD=serine carboxypeptidase-like protein
FL= gb:AK059488.1 gb:D17587.1 gb:AK120117.1 gb:AK058769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2962011/11Serine carboxypeptidase-like precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29594OsAffx.30389.2.S1_at4/117+17394303..17394710hypothetical protein
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29610Os.12013.3.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_a_at9/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29620Os.137.1.S1_at11/117+17408334..17412155Serine carboxypeptidase-like precursor, putative, expressed
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.137.1.S1_at--1152--911Chr07:17409097..17409121 (25 bp)
AGGCTTTTGTGTCCTCATCTGAGGA
LOC_Os07g29620
Os.137.1.S1_at--1079--4851Chr07:17409031..17409055 (25 bp)
GCTATGGACCTTTGAGTTTCTTGAA
LOC_Os07g29620
Os.137.1.S1_at--291--10751Chr07:17408801..17408821 (21 bp)
TTGAAGGTCCACGATGCTGGCCACA
LOC_Os07g29620
Os.137.1.S1_at--339--8571Chr07:17408767..17408791 (25 bp)
TGGATCAACCGAAGGTCGCTCTGGA
LOC_Os07g29620
Os.137.1.S1_at--604--3431Chr07:17408690..17408714 (25 bp)
CAGAGGCTCGATTTTACCATGTGAT
LOC_Os07g29620
Os.137.1.S1_at--1037--8851Chr07:17408569..17408593 (25 bp)
TGATGACAAGCTCACTGCTACCGTA
LOC_Os07g29620
Os.137.1.S1_at--75--211Chr07:17408536..17408560 (25 bp)
ATTTCCCTTGTACGGTGCTTGAGTC
LOC_Os07g29620
Os.137.1.S1_at--586--5811Chr07:17408497..17408521 (25 bp)
GACGCCACTCGATTGTTAGCATGTA
LOC_Os07g29620
Os.137.1.S1_at--1152--8131Chr07:17408452..17408476 (25 bp)
GGACAGAAGCCAATCTCTTTGTTAT
LOC_Os07g29620
Os.137.1.S1_at--352--8891Chr07:17408428..17408452 (25 bp)
TGAGGGCTGTTTATGTCCAGGTCTT
LOC_Os07g29620
Os.137.1.S1_at--980--8571Chr07:17408367..17408391 (25 bp)
TGGTATAATCTGTGCTCCAAACTAT
LOC_Os07g29620
Target Sequence 
AGGCTTTTGTGTCCTCATCTGAGGAACCTTTCACAGTTGATGGAAAAGAAGCCGGTATTCTGAAAAGCTATGGACCTTTG
AGTTTCTTGAAGGTCCACGATGCTGGCCACATGGTACCAATGGATCAACCGAAGGTCGCTCTGGAGATGCTGATGAGGTG
GACCTCAGGAAACCTTTCCAACGCATCCTCGAGCTTCCAGAGGCTCGATTTTACCATGTGATATACACACTCTGTCCTCT
TGTGACACGATCAGAGGAACATGGTTTCCCCATAAATTAGTATAAAGTGCTTAGTAGGCACGTCAGAATGATTTTAGGTG
ATGACAAGCTCACTGCTACCGTACAGATGTTATTTCCCTTGTACGGTGCTTGAGTCACTGAAGTATCGGTGACGCCACTC
GATTGTTAGCATGTAATAAAGCTTAGAATTGTTATGGACAGAAGCCAATCTCTTTGTTATGAGGGCTGTTTATGTCCAGG
TCTTGTATGCTATTATAATACTTATGGCTTGTGCTATGGATGGTATAATCTGTGCTCCAAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis