Browse Element(s) Details


OsAffx.22314.2.S1_at

Description tigr:9635.m02896
TID=OsAffx.22314.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2971011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29660OsAffx.22317.1.S1_at11/117+17437850..17438140hypothetical protein
LOC_Os07g29670NANA7+17438877..17442520hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_x_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.28662.1.S1_at10/117+17443413..17448062hypothetical protein
LOC_Os07g29700Os.10046.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29700OsAffx.10906.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29710OsAffx.22314.2.S1_at11/117+17460700..17460948hypothetical protein
LOC_Os07g29710OsAffx.22314.1.S1_x_at4/117+17460700..17460948hypothetical protein
LOC_Os07g29720OsAffx.28663.1.S1_at11/117+17469440..17470378hypothetical protein
LOC_Os07g29730NANA7+17473093..17477552transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g29740Os.47463.1.S1_x_at2/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29740Os.14491.2.S1_x_at1/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22314.2.S1_at--686--4671Chr07:17460788..17460812 (25 bp)
GCGGTGGTCATAGGGTATGCGAACG
LOC_Os07g29710
OsAffx.22314.2.S1_at--539--7071Chr07:17460794..17460818 (25 bp)
GTCATAGGGTATGCGAACGGAGGGA
LOC_Os07g29710
OsAffx.22314.2.S1_at--484--591Chr07:17460844..17460868 (25 bp)
ATGCCATCGTCGACACTTGGCCAGC
LOC_Os07g29710
OsAffx.22314.2.S1_at--57--511Chr07:17460849..17460873 (25 bp)
ATCGTCGACACTTGGCCAGCAGCAA
LOC_Os07g29710
OsAffx.22314.2.S1_at--458--9411Chr07:17460850..17460874 (25 bp)
TCGTCGACACTTGGCCAGCAGCAAG
LOC_Os07g29710
OsAffx.22314.2.S1_at--158--9371Chr07:17460853..17460877 (25 bp)
TCGACACTTGGCCAGCAGCAAGTGA
LOC_Os07g29710
OsAffx.22314.2.S1_at--295--3611Chr07:17460859..17460883 (25 bp)
CTTGGCCAGCAGCAAGTGAGCCGAT
LOC_Os07g29710
OsAffx.22314.2.S1_at--850--8451Chr07:17460861..17460885 (25 bp)
TGGCCAGCAGCAAGTGAGCCGATGC
LOC_Os07g29710
OsAffx.22314.2.S1_at--200--8451Chr07:17460862..17460886 (25 bp)
GGCCAGCAGCAAGTGAGCCGATGCA
LOC_Os07g29710
OsAffx.22314.2.S1_at--626--1671Chr07:17460877..17460901 (25 bp)
AGCCGATGCAAGAGAGGAGCCGTCA
LOC_Os07g29710
OsAffx.22314.2.S1_at--942--4211Chr07:17460879..17460903 (25 bp)
CCGATGCAAGAGAGGAGCCGTCAAG
LOC_Os07g29710
Target Sequence 
GCGGTGGTCATAGGGTATGCGAACGGAGGGAGGCAGCTCCGGCGCATCTCTCCTCCATGCCATCGTCGACACTTGGCCAG
CAGCAAGTGAGCCGATGCAAGAGAGGAGCCGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22314.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis