Browse Element(s) Details


OsAffx.22421.4.S1_x_at

Description gb:XM_354192.1
DB_XREF= gi:35189817
GEN=P0565A07.17
TID=OsAffx.22421.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g293403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g141803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g117803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g355203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g264702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g203902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g304502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g161402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g263202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g204902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g087202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g353701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g097121/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g116601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29320Os.27435.1.S1_x_at4/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29320OsAffx.22421.2.S1_at3/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29320Os.46334.1.S1_x_at1/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29320Os.46334.1.S1_at1/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29330NANA4+17216770..17223523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29340OsAffx.22421.4.S1_x_at3/114+17226361..17228057transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29340Os.26886.3.S1_x_at1/114+17226361..17228057transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29350OsAffx.28996.1.S1_at6/114+17237784..17249745retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22421.4.S1_x_at--1054--3851Chr07:7685702..7685726 (25 bp)
CTGATGCGTCAGTACAAGGAGTTTA
NONE
OsAffx.22421.4.S1_x_at--1127--104320Chr12:21472195..21472218 (24 bp)
TTAGAGATGGCGTATTAAGTTTTAT
LOC_Os12g35370
OsAffx.22421.4.S1_x_at--827--2811Chr07:7685740..7685764 (25 bp)
AAGTTTTATGAAAGCCACAGTGGAG
NONE
OsAffx.22421.4.S1_x_at--946--73914Chr12:19328193..19328217 (25 bp)
GTGTTGTCCATGTAGCGATTGCAGG
NONE
OsAffx.22421.4.S1_x_at--833--11718Chr12:19328247..19328270 (24 bp)
AGTACACGCTCACTTGATACGCCGA
NONE
OsAffx.22421.4.S1_x_at--648--2051Chr07:7685859..7685883 (25 bp)
ACTTGATACGCCGAAGAATTGTTCC
NONE
OsAffx.22421.4.S1_x_at--144--10111Chr07:7685929..7686035 (25 bp)
TATGGCTGAAGATGAGAAGATCGCA
NONE
OsAffx.22421.4.S1_x_at--1150--3952Chr07:7686070..7686094 (25 bp)
CGGGCTATTGCGCAAGAATAAGTAA
NONE
OsAffx.22421.4.S1_x_at--173--10712Chr07:7686077..7686101 (25 bp)
TTGCGCAAGAATAAGTAAGTACGTT
NONE
OsAffx.22421.4.S1_x_at--7--10851Chr07:7686105..7686129 (25 bp)
TTGGAGGATCTAAAGCTGGTTGAAA
NONE
OsAffx.22421.4.S1_x_at--795--1611Chr07:7686118..7686142 (25 bp)
AGCTGGTTGAAATGAAGTCTCACGA
NONE
Target Sequence 
CTGATGCGTCAGTACAAGGAGTTTAGAGATGGCGTATTAAGTTTTATGAAAGCCACAGTGGAGGATAGGATAAGAAGAAA
CGACAAGTACATGTGTTGTCCATGTAGCGATTGCAGGAATGAGATTTGGTTGGATGATGAAAAGGAAGTACACGCTCACT
TGATACGCCGAAGAATTGTTCCCGATCAAGCTTCCTACGCGCAGGCTCATTTCACAGTGCTGCAACATATGGCTGAAGAT
GAGAAGATCGCAATGCTATCATGTCTGGCAGATATTAAAGTTCCTTCGGGCTATTGCGCAAGAATAAGTAAGTACGTTAA
ATTGGAGGATCTAAAGCTGGTTGAAATGAAGTCTCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22421.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis