Browse Element(s) Details


OsAffx.22433.3.S1_s_at

Description tigr:9631.m01027
TID=OsAffx.22433.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g151908/11expressed protein
LOC_Os03g111308/11hypothetical protein
LOC_Os11g088302/11kelch repeat-containing F-box family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15160NANA3+8260070..8266794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g15170NANA3+8269979..8271098hypothetical protein
LOC_Os03g15180NANA3+8273742..8285315PH domain containing protein, expressed
LOC_Os03g15190Os.50546.1.S1_at11/113+8286349..8290609expressed protein
LOC_Os03g15190OsAffx.22433.3.S1_s_at8/113+8286349..8290609expressed protein
LOC_Os03g15200NANA3+8300441..8300641hypothetical protein
LOC_Os03g15210NANA3+8301888..8302739hypothetical protein
LOC_Os03g15220Os.50820.1.S1_at10/113+8306425..8307634expressed protein
LOC_Os03g15230OsAffx.27508.42.S1_s_at11/113+8308170..8310796expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22433.3.S1_s_at--1081--3331NONE
CACGGCACACCGATATCTTGTGAGA
NONE
OsAffx.22433.3.S1_s_at--141--1791NONE
ACCGATATCTTGTGAGAGGGAGTGC
NONE
OsAffx.22433.3.S1_s_at--372--5353Chr11:4676895..4676919 (25 bp)
GAAGATTACCGCCTGATAAAGCTTT
LOC_Os11g08830
OsAffx.22433.3.S1_s_at--306--6553Chr11:4676898..4676921 (24 bp)
GATTACCGCCTGATAAAGCTTTCCA
LOC_Os11g08830
OsAffx.22433.3.S1_s_at--171--1792Chr03:5709643..5709667 (25 bp)
ACCGCCTGATAAAGCTTTCCATAAT
LOC_Os03g11130
OsAffx.22433.3.S1_s_at--593--2352Chr03:5709653..5709677 (25 bp)
AAAGCTTTCCATAATTGATTTTAAG
LOC_Os03g11130
OsAffx.22433.3.S1_s_at--449--4332Chr03:5709876..5709900 (25 bp)
CCATGATGCTGCTCGGTTGCAAAAC
LOC_Os03g11130
OsAffx.22433.3.S1_s_at--382--4812Chr03:5709886..5709910 (25 bp)
GCTCGGTTGCAAAACATTGACCATT
LOC_Os03g11130
OsAffx.22433.3.S1_s_at--125--3611NONE
CATTGACCATTTGCATGGTTGGGAA
NONE
OsAffx.22433.3.S1_s_at--390--5332Chr03:5710642..5710666 (25 bp)
GAAGATGACATTGTTGGTTTGGTTG
LOC_Os03g11130
OsAffx.22433.3.S1_s_at--582--3592Chr03:5710746..5710770 (25 bp)
CATTAGCAAGTATATGCCAAATCTA
LOC_Os03g11130
Target Sequence 
CACGGCACACCGATATCTTGTGAGAGGGAGTGCAGCCGAGGAGAAGATTACCGCCTGATAAAGCTTTCCATAATTGATTT
TAAGAACAAGCACGAGAAGGTGGTTGTGGTGGAATGCAGGGGCCATGATGCTGCTCGGTTGCAAAACATTGACCATTTGC
ATGGTTGGGAAGATGACATTGTTGGTTTGGTTGAAAAGAAACACGGGAATCGGAAGTTTTCACTCTCCTTCGAATGTGAG
ACACTGAAGGCTGACAAAGCTGCAGAAGAGCACATTAGCAAGTATATGCCAAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22433.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis