Browse Element(s) Details


OsAffx.22668.2.S1_at

Description tigr:9640.m02707
TID=OsAffx.22668.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2816811/11hypothetical protein
LOC_Os12g2812811/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28119OsAffx.10439.1.S1_at1/1112+16605383..16608436transposon protein, putative, Mutator sub-class
LOC_Os12g28128OsAffx.22668.2.S1_at11/1112+16609030..16609407hypothetical protein
LOC_Os12g28128OsAffx.22668.1.S1_x_at2/1112+16609030..16609407hypothetical protein
LOC_Os12g28137Os.26889.1.S1_at11/1112+16614033..16616018ATPase, AAA family protein, expressed
LOC_Os12g28150NANA12+16616434..16620306retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g28159OsAffx.10439.1.S1_at1/1112+16626013..16629066transposon protein, putative, Mutator sub-class
LOC_Os12g28168OsAffx.22668.2.S1_at11/1112+16629660..16630037hypothetical protein
LOC_Os12g28168OsAffx.22668.1.S1_x_at2/1112+16629660..16630037hypothetical protein
LOC_Os12g28177Os.26889.1.S1_at3/1112+16634772..16636304ATPase, AAA family protein
LOC_Os12g28190NANA12+16637064..16643174retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g28200NANA12+16643491..16646412retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22668.2.S1_at--332--9712Chr12:16629874..16629898 (25 bp)
TCAAGTGGATCGAATGTTACAAGAA
LOC_Os12g28168
OsAffx.22668.2.S1_at--672--7912Chr12:16629846..16629870 (25 bp)
GGTTGAAGGATTGAGTCTACATGCA
LOC_Os12g28168
OsAffx.22668.2.S1_at--1038--6592Chr12:16629838..16629862 (25 bp)
GATTGAGTCTACATGCAGTTGATGA
LOC_Os12g28168
OsAffx.22668.2.S1_at--113--6332Chr12:16629818..16629842 (25 bp)
GATGAAGCTCCCAGTGATGTTGCAT
LOC_Os12g28168
OsAffx.22668.2.S1_at--790--2692Chr12:16629814..16629838 (25 bp)
AAGCTCCCAGTGATGTTGCATTGGA
LOC_Os12g28168
OsAffx.22668.2.S1_at--1024--4172Chr12:16629809..16629833 (25 bp)
CCCAGTGATGTTGCATTGGAGCATA
LOC_Os12g28168
OsAffx.22668.2.S1_at--241--10872Chr12:16629794..16629818 (25 bp)
TTGGAGCATATGGTTGCTGCTCCTG
LOC_Os12g28168
OsAffx.22668.2.S1_at--410--10712Chr12:16629781..16629805 (25 bp)
TTGCTGCTCCTGTAGAGATGAAGCT
LOC_Os12g28168
OsAffx.22668.2.S1_at--405--8572Chr12:16629716..16629740 (25 bp)
TGGATTCAAGTTTTAGTGATGATCA
LOC_Os12g28168
OsAffx.22668.2.S1_at--813--9692Chr12:16629694..16629718 (25 bp)
TCAACATAGGCCTGCTAGTTCTTTG
LOC_Os12g28168
OsAffx.22668.2.S1_at--628--3572Chr12:16629690..16629714 (25 bp)
CATAGGCCTGCTAGTTCTTTGTTTT
LOC_Os12g28168
Target Sequence 
TCAAGTGGATCGAATGTTACAAGAAGATGGTTGAAGGATTGAGTCTACATGCAGTTGATGAAGCTCCCAGTGATGTTGCA
TTGGAGCATATGGTTGCTGCTCCTGTAGAGATGAAGCTGAGGTCGGTTGATGATGGAAAGATGGATAAGTTGATAAATTG
GATTCAAGTTTTAGTGATGATCAACATAGGCCTGCTAGTTCTTTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22668.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis