Browse Element(s) Details


OsAffx.22692.1.S1_x_at

Description gb:NM_184803.1
DB_XREF= gi:34896695
TID=OsAffx.22692.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0087M10.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4003011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40000Os.22924.1.S1_at10/113+22170865..22172779expressed protein
LOC_Os03g40010Os.11763.1.S1_at10/113+22173892..22181813expressed protein
LOC_Os03g40014NANA3+22185106..22186086NA
LOC_Os03g40020Os.45095.1.S1_at11/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40020Os.53366.1.S1_x_at4/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40030OsAffx.22692.1.S1_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40030OsAffx.22692.1.S1_x_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40040Os.30589.1.S1_at11/113+22197814..22199276expressed protein
LOC_Os03g40060Os.28873.2.A1_at11/113+22208198..22209514hypothetical protein
LOC_Os03g40070Os.52824.1.S1_at11/113+22209847..22213778transposon protein, putative, unclassified, expressed
LOC_Os03g40080OsAffx.25445.1.S1_at5/113+22217138..22221790GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22692.1.S1_x_at--1116--5611Chr03:22194138..22194162 (25 bp)
GACAACAAGACCTTCGCGAGGGAGG
LOC_Os03g40030
OsAffx.22692.1.S1_x_at--56--5311Chr03:22194165..22194189 (25 bp)
GAAGGCAGCGGCGTTTTCGGAGTCC
LOC_Os03g40030
OsAffx.22692.1.S1_x_at--501--5871Chr03:22194198..22194222 (25 bp)
GAGCCCTCCCTACGCTAGCGATGGT
LOC_Os03g40030
OsAffx.22692.1.S1_x_at--1047--4291Chr03:22194206..22194230 (25 bp)
CCTACGCTAGCGATGGTTCGACGGA
LOC_Os03g40030
OsAffx.22692.1.S1_x_at--517--5451Chr03:22194264..22194288 (25 bp)
GAACGGGCAACGACGCGGGCACCTC
LOC_Os03g40030
OsAffx.22692.1.S1_x_at--917--1751Chr03:22194284..22194308 (25 bp)
ACCTCCCAGCGTTGGCGACGGAGAC
LOC_Os03g40030
OsAffx.22692.1.S1_x_at--1071--1931Chr03:22194375..22194399 (25 bp)
ACGGCGATGGTGAATGCCCTCCCCA
LOC_Os03g40030
OsAffx.22692.1.S1_x_at--244--9311Chr03:22194394..22194418 (25 bp)
TCCCCACGCCAGCAGAAGGAGACGA
LOC_Os03g40030
OsAffx.22692.1.S1_x_at--333--1392Chr03:22194413..22194437 (25 bp)
AGACGAGCGCGTCGTCGGTTGGATC
LOC_Os03g40030
OsAffx.22692.1.S1_x_at--1120--491Chr03:22194435..22194459 (25 bp)
ATCGGGAACCGGAGTCCTCCCTGCA
LOC_Os03g40030
OsAffx.22692.1.S1_x_at--110--5091Chr03:22194457..22194481 (25 bp)
GCACCAGCAGCGGTTTGACGGAGGC
LOC_Os03g40030
Target Sequence 
GACAACAAGACCTTCGCGAGGGAGGGAGAAGGCAGCGGCGTTTTCGGAGTCCGCCGCGCGGAGCCCTCCCTACGCTAGCG
ATGGTTCGACGGAGGTGGTGGCAGCGGGGGACTGGACGGCATGGGGGAACGGGCAACGACGCGGGCACCTCCCAGCGTTG
GCGACGGAGACGGTGGCAGCAGGGGACTGGACGGCGTGGGGAACGGGTGACGACGCGGGCACCTCCCAGCGCTGGCGACG
GCGATGGTGAATGCCCTCCCCACGCCAGCAGAAGGAGACGAGCGCGTCGTCGGTTGGATCGGGAACCGGAGTCCTCCCTG
CACCAGCAGCGGTTTGACGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22692.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis