Browse Element(s) Details


OsAffx.23296.1.S1_at

Description tigr:9629.m01827
TID=OsAffx.23296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1878011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18730OsAffx.20135.1.A1_x_at1/111+10556665..10557747hypothetical protein
LOC_Os01g18744Os.3655.1.S1_at11/111+10558108..10562090Transferase family protein, expressed
LOC_Os01g18760NANA1+10569485..10570999hypothetical protein
LOC_Os01g18770NANA1+10572708..10573307hypothetical protein
LOC_Os01g18780OsAffx.23296.1.S1_at11/111+10575177..10577206hypothetical protein
LOC_Os01g18780OsAffx.23296.1.S1_s_at11/111+10575177..10577206hypothetical protein
LOC_Os01g18790NANA1+10594577..10595080hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23296.1.S1_at--488--1931Chr01:10575426..10575450 (25 bp)
ACGGATCCGAAGGTGGCTATCTACC
LOC_Os01g18780
OsAffx.23296.1.S1_at--100--7951Chr01:10575424..10575448 (25 bp)
GGATCCGAAGGTGGCTATCTACCCA
LOC_Os01g18780
OsAffx.23296.1.S1_at--354--551Chr01:10575422..10575446 (25 bp)
ATCCGAAGGTGGCTATCTACCCACT
LOC_Os01g18780
OsAffx.23296.1.S1_at--269--5311Chr01:10575418..10575442 (25 bp)
GAAGGTGGCTATCTACCCACTACTT
LOC_Os01g18780
OsAffx.23296.1.S1_at--1107--10151Chr01:10575409..10575433 (25 bp)
TATCTACCCACTACTTCCAAAGCGA
LOC_Os01g18780
OsAffx.23296.1.S1_at--891--2011Chr01:10575400..10575424 (25 bp)
ACTACTTCCAAAGCGACTCGATCGT
LOC_Os01g18780
OsAffx.23296.1.S1_at--168--4131Chr01:10575357..10575381 (25 bp)
CGCATGCCCTTCCATCGTTAGGCTT
LOC_Os01g18780
OsAffx.23296.1.S1_at--902--3631Chr01:10575349..10575373 (25 bp)
CTTCCATCGTTAGGCTTCCATTGAT
LOC_Os01g18780
OsAffx.23296.1.S1_at--777--9231Chr01:10575347..10575371 (25 bp)
TCCATCGTTAGGCTTCCATTGATTG
LOC_Os01g18780
OsAffx.23296.1.S1_at--813--511Chr01:10575344..10575368 (25 bp)
ATCGTTAGGCTTCCATTGATTGCAG
LOC_Os01g18780
OsAffx.23296.1.S1_at--276--4031Chr01:10575342..10575366 (25 bp)
CGTTAGGCTTCCATTGATTGCAGGT
LOC_Os01g18780
Target Sequence
ACGGATCCGAAGGTGGCTATCTACCCACTACTTCCAAAGCGACTCGATCGTCCCTCCCTTGTCGACCTCCGCATGCCCTT
CCATCGTTAGGCTTCCATTGATTGCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis