Browse Element(s) Details


OsAffx.23296.1.S1_s_at

Description tigr:9629.m01827
TID=OsAffx.23296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1878011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18730OsAffx.20135.1.A1_x_at1/111+10556665..10557747hypothetical protein
LOC_Os01g18744Os.3655.1.S1_at11/111+10558108..10562090Transferase family protein, expressed
LOC_Os01g18760NANA1+10569485..10570999hypothetical protein
LOC_Os01g18770NANA1+10572708..10573307hypothetical protein
LOC_Os01g18780OsAffx.23296.1.S1_at11/111+10575177..10577206hypothetical protein
LOC_Os01g18780OsAffx.23296.1.S1_s_at11/111+10575177..10577206hypothetical protein
LOC_Os01g18790NANA1+10594577..10595080hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23296.1.S1_s_at--356--8071Chr01:10575689..10575713 (25 bp)
GGAGCAGATCCGGTCAGCGGTAGCA
LOC_Os01g18780
OsAffx.23296.1.S1_s_at--144--3251Chr01:10575616..10575640 (25 bp)
CACACCCTTCCATGGGAGAACGAAG
LOC_Os01g18780
OsAffx.23296.1.S1_s_at--359--4711Chr01:10575560..10575584 (25 bp)
GCGGCGCTCGGCAGTAACAGTGCAG
LOC_Os01g18780
OsAffx.23296.1.S1_s_at--469--8071Chr01:10575474..10575498 (25 bp)
GGAGCAAGGCGGTTCTACTGCCAGC
LOC_Os01g18780
OsAffx.23296.1.S1_s_at--969--2931Chr01:10575469..10575493 (25 bp)
AAGGCGGTTCTACTGCCAGCTGGCC
LOC_Os01g18780
OsAffx.23296.1.S1_s_at--993--4131Chr01:10575445..10575469 (25 bp)
CGCGCCCTTCCTTGGGAACACGGAT
LOC_Os01g18780
OsAffx.23296.1.S1_s_at--939--3991Chr01:10575437..10575461 (25 bp)
TCCTTGGGAACACGGATCCGAAGGT
LOC_Os01g18780
OsAffx.23296.1.S1_s_at--395--7771Chr01:10575320..10575344 (25 bp)
GGTGACAAGTCACGTCGTAATGGAT
LOC_Os01g18780
OsAffx.23296.1.S1_s_at--886--1891Chr01:10575309..10575333 (25 bp)
ACGTCGTAATGGATTTGGCGCCGGC
LOC_Os01g18780
OsAffx.23296.1.S1_s_at--320--10531Chr01:10575238..10575262 (25 bp)
TTCATGGTGGGTTGGCGGGCAGGTC
LOC_Os01g18780
OsAffx.23296.1.S1_s_at--603--5011Chr01:10575220..10575244 (25 bp)
GCAGGTCTGGCGTGGGCGCATTCAT
LOC_Os01g18780
Target Sequence 
GGAGCAGATCCGGTCAGCGGTAGCAGCGCGGGGGAGCAGGACCTCGGGAGCAGTGGTTCTGCCGCTGGCCGGCCACACCC
TTCCATGGGAGAACGAAGGGGTGGTGGCGGCACTCGTGTGTGGGAGGGGGCGGCGCTCGGCAGTAACAGTGCAGGGGAGT
GGGCAGCGGGGAGCAAATCCGGCTCGGCGGCAGCGGCACGGGGAGCCGGACCTCGGGAGCAAGGCGGTTCTACTGCCAGC
TGGCCGCGCCCTTCCTTGGGAACACGGATCCGAAGGTGGCTATCTACCCACTACTTCCAAAGCGACTCGATCGTCCCTCC
CTTGTCGACCTCCGCATGCCCTTCCATCGTTAGGCTTCCATTGATTGCAGGTGACAAGTCACGTCGTAATGGATTTGGCG
CCGGCGAGTCGCACGGGCGTGCAAGCTCGTCCACGGCGGGTGGTGGGCGCGTTCATGGTGGGTTGGCGGGCAGGTCTGGC
GTGGGCGCATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23296.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis