Browse Element(s) Details


OsAffx.23385.1.S1_at

Description tigr:9629.m02437
TID=OsAffx.23385.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=horcolin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g251509/11Jacalin-like lectin domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25090NANA1+14145776..14147765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25100OsAffx.11198.1.S1_at10/111+14149730..14151018Glutathione S-transferase IV, putative, expressed
LOC_Os01g25110Os.22583.1.A1_at3/111+14153724..14158296Clathrin adaptor complex small chain family protein
LOC_Os01g25120Os.14491.2.S1_x_at5/111+14160949..14164649transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25120Os.47463.1.S1_x_at5/111+14160949..14164649transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25130NANA1+14165822..14166232transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25140NANA1+14167642..14170947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25150OsAffx.23385.1.S1_at9/111+14171974..14174797Jacalin-like lectin domain containing protein
LOC_Os01g25160OsAffx.23386.1.S1_at11/111+14192960..14193587Jacalin-like lectin domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23385.1.S1_at--668--8171Chr01:14174081..14174105 (25 bp)
GGAACTAGCCATGACATCACTGAGA
LOC_Os01g25150
OsAffx.23385.1.S1_at--621--1951Chr01:14174063..14174087 (25 bp)
ACTGAGACTCCGAAGGACCTTATCT
LOC_Os01g25150
OsAffx.23385.1.S1_at--1045--5831Chr01:14174048..14174072 (25 bp)
GACCTTATCTCCGTCCAGATTAAGA
LOC_Os01g25150
OsAffx.23385.1.S1_at--879--5951Chr01:14174025..14174049 (25 bp)
GAGCAAGGACACAATCGACCACCTC
LOC_Os01g25150
OsAffx.23385.1.S1_at--764--5571Chr01:14173980..14174004 (25 bp)
GAAAGGGAACCAGCAGACAGTGTCT
LOC_Os01g25150
OsAffx.23385.1.S1_at--215--3511NONE
CATGGGAGACGATCACCTGGCGGAA
NONE
OsAffx.23385.1.S1_at--1016--1751NONE
ACCTGGCGGAAGTCTCTGGGTCAGT
NONE
OsAffx.23385.1.S1_at--1096--7531Chr01:14172153..14172177 (25 bp)
GGGCCATTCCCATCGCAAAAACAGG
LOC_Os01g25150
OsAffx.23385.1.S1_at--64--931Chr01:14172131..14172155 (25 bp)
AGGCTTGCACCGTAAATTCACTCAC
LOC_Os01g25150
OsAffx.23385.1.S1_at--872--5611Chr01:14172051..14172075 (25 bp)
GACAAAGATTTCAAAGTCCCTGTGG
LOC_Os01g25150
OsAffx.23385.1.S1_at--504--8151Chr01:14172026..14172050 (25 bp)
GGAAAGGCCGCATTGTCGGTTTCTA
LOC_Os01g25150
Target Sequence 
GGAACTAGCCATGACATCACTGAGACTCCGAAGGACCTTATCTCCGTCCAGATTAAGAGCAAGGACACAATCGACCACCT
CACGTTCACCTACAAGGACACGAAAGGGAACCAGCAGACAGTGTCTTGGGGCGGCACCATGGGAGACGATCACCTGGCGG
AAGTCTCTGGGTCAGTGGGGCCATTCCCATCGCAAAAACAGGCTTGCACCGTAAATTCACTCACCTTCGTCACCAGCGAA
GGTAGAAGAGGCGGGCCATGGGGAAAACGTGGAAAGGATGACAAAGATTTCAAAGTCCCTGTGGGGAAAGGCCGCATTGT
CGGTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis