Browse Element(s) Details


OsAffx.23426.1.S1_at

Description tigr:9629.m02692
TID=OsAffx.23426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2812011/11hypothetical protein
LOC_Os01g2810011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28089OsAffx.2103.1.S1_at11/111+16049681..16051378hypothetical protein
LOC_Os01g28100OsAffx.23426.1.S1_at11/111+16053088..16053664hypothetical protein
LOC_Os01g28109OsAffx.2103.1.S1_at11/111+16066753..16068450hypothetical protein
LOC_Os01g28120OsAffx.23426.1.S1_at11/111+16070160..16070736hypothetical protein
LOC_Os01g28130OsAffx.25367.1.S1_at1/111+16074173..16080352retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23426.1.S1_at--913--3772Chr01:16070375..16070399 (25 bp)
CTCGGCGGCGATGGATCAAGTCAAC
LOC_Os01g28120
OsAffx.23426.1.S1_at--369--6252Chr01:16070384..16070408 (25 bp)
GATGGATCAAGTCAACCGCGAGTGA
LOC_Os01g28120
OsAffx.23426.1.S1_at--743--2612Chr01:16070397..16070421 (25 bp)
AACCGCGAGTGAATCTAGTGGTGGC
LOC_Os01g28120
OsAffx.23426.1.S1_at--840--4672Chr01:16070428..16070452 (25 bp)
GCGGATCCAGATGGCACCGGCAGAT
LOC_Os01g28120
OsAffx.23426.1.S1_at--989--1772Chr01:16070443..16070467 (25 bp)
ACCGGCAGATCTTGGGCAGGGCTCA
LOC_Os01g28120
OsAffx.23426.1.S1_at--197--1092Chr01:16070460..16070484 (25 bp)
AGGGCTCAGTGCAGCGGATTCAGAC
LOC_Os01g28120
OsAffx.23426.1.S1_at--1058--9032Chr01:16070469..16070493 (25 bp)
TGCAGCGGATTCAGACGACAGTGAC
LOC_Os01g28120
OsAffx.23426.1.S1_at--736--9232Chr01:16070566..16070590 (25 bp)
TCCAGGCGGCAGTCTGTGGATCTAA
LOC_Os01g28120
OsAffx.23426.1.S1_at--947--7172Chr01:16070577..16070601 (25 bp)
GTCTGTGGATCTAAGGCGTGGCTCA
LOC_Os01g28120
OsAffx.23426.1.S1_at--689--3732Chr01:16070587..16070611 (25 bp)
CTAAGGCGTGGCTCAACATTTGTGC
LOC_Os01g28120
OsAffx.23426.1.S1_at--748--412Chr01:16070640..16070664 (25 bp)
ATCTAGACGGCGATACGCGGGTGAA
LOC_Os01g28120
Target Sequence 
CTCGGCGGCGATGGATCAAGTCAACCGCGAGTGAATCTAGTGGTGGCGTGCGAGCGGATCCAGATGGCACCGGCAGATCT
TGGGCAGGGCTCAGTGCAGCGGATTCAGACGACAGTGACGAATGCGAGGCGGTGACGGGTGGATCTAGGACGGCGCTCAG
TGGTGGAGGATCCAGGCGGCCTGCGGGCAAGTCCAGGCGGCAGTCTGTGGATCTAAGGCGTGGCTCAACATTTGTGCTCG
GCGGCGGCGGGGCTTGGTGTGGTGGATCTAGACGGCGATACGCGGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis