Browse Element(s) Details


OsAffx.23456.1.S1_at

Description tigr:9629.m02871
TID=OsAffx.23456.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2989011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29830Os.52371.1.S1_at11/111+17043536..17046240expressed protein
LOC_Os01g29840Os.18337.1.S1_x_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_s_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_x_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29850NANA1+17053910..17055723hypothetical protein
LOC_Os01g29860OsAffx.11260.1.S1_at10/111+17055989..17057775hypothetical protein
LOC_Os01g29860Os.51201.1.S1_x_at6/111+17055989..17057775hypothetical protein
LOC_Os01g29870OsAffx.23454.1.S1_at10/111+17058510..17060585Multidrug resistance protein 1, putative, expressed
LOC_Os01g29880NANA1+17065927..17067780Zinc knuckle family protein
LOC_Os01g29890OsAffx.23456.1.S1_at11/111+17070047..17070319hypothetical protein
LOC_Os01g29900NANA1+17088771..17094280retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23456.1.S1_at--740--8651Chr01:17070252..17070276 (25 bp)
TGGGCTCTGCTAACGGCGCTGGCAC
LOC_Os01g29890
OsAffx.23456.1.S1_at--689--9031Chr01:17070223..17070247 (25 bp)
TGCAGCGCCGAAGCCTGCAATACTA
LOC_Os01g29890
OsAffx.23456.1.S1_at--433--4091Chr01:17070215..17070239 (25 bp)
CGAAGCCTGCAATACTAGCCGATAT
LOC_Os01g29890
OsAffx.23456.1.S1_at--792--3091Chr01:17070205..17070229 (25 bp)
AATACTAGCCGATATTCGTCAGCAC
LOC_Os01g29890
OsAffx.23456.1.S1_at--258--4511Chr01:17070198..17070222 (25 bp)
GCCGATATTCGTCAGCACAAGAGGA
LOC_Os01g29890
OsAffx.23456.1.S1_at--765--9651Chr01:17070187..17070211 (25 bp)
TCAGCACAAGAGGACCATGCGAGCA
LOC_Os01g29890
OsAffx.23456.1.S1_at--511--10631Chr01:17070146..17070170 (25 bp)
TTCGACAGTAGAACAACTTCATGCA
LOC_Os01g29890
OsAffx.23456.1.S1_at--40--652Chr02:6278664..6278683 (20 bp)
ATGCAGTCCTGCACCTAGGGATGAA
NONE
OsAffx.23456.1.S1_at--437--3831Chr01:17070118..17070142 (25 bp)
CTGCACCTAGGGATGAACACGGAGA
LOC_Os01g29890
OsAffx.23456.1.S1_at--297--7991Chr01:17070108..17070132 (25 bp)
GGATGAACACGGAGATGAGCAAGCT
LOC_Os01g29890
OsAffx.23456.1.S1_at--656--5954Chr02:23938271..23938295 (25 bp)
GAGCAAGCTGACTAATTATGTTTCA
NONE
Target Sequence 
TGGGCTCTGCTAACGGCGCTGGCACCCCTTGCAGCGCCGAAGCCTGCAATACTAGCCGATATTCGTCAGCACAAGAGGAC
CATGCGAGCAGCCCATATTCGTGGAGTTCGACAGTAGAACAACTTCATGCAGTCCTGCACCTAGGGATGAACACGGAGAT
GAGCAAGCTGACTAATTATGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis