Browse Element(s) Details


OsAffx.23460.1.S1_at

Description gb:NM_189138.1
DB_XREF= gi:34905359
GEN=OJ1126_G08.8
TID=OsAffx.23460.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1126_G08.8 (OJ1126_G08.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g312108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31160OsAffx.1198.1.S1_at11/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160Os.38751.1.A1_at2/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.28492.1.S1_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160Os.49802.1.S2_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.30280.1.S1_x_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31170NANA1+17370713..17371162hypothetical protein
LOC_Os01g31180NANA1+17372372..17374191retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31190NANA1+17381361..17385224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31200NANA1+17386130..17388895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31210OsAffx.23460.1.S1_at8/111+17391926..17392381hypothetical protein
LOC_Os01g31220Os.6438.1.S1_a_at11/111+17393803..17397678expressed protein
LOC_Os01g31220Os.6438.2.S1_x_at11/111+17393803..17397678expressed protein
LOC_Os01g31230OsAffx.22633.1.S1_at1/111+17404852..17408465retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31240Os.24648.1.A1_at1/111+17409517..17413264retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23460.1.S1_at--486--5451Chr01:17391894..17391918 (25 bp)
GAACGAACTGTGAAAACCTACTGCT
NONE
OsAffx.23460.1.S1_at--783--2631Chr01:17391908..17391932 (25 bp)
AACCTACTGCTTTGCACGATGTCAG
NONE
OsAffx.23460.1.S1_at--119--4891Chr01:17391916..17391940 (25 bp)
GCTTTGCACGATGTCAGGATGTGGC
NONE
OsAffx.23460.1.S1_at--665--791Chr01:17391934..17391958 (25 bp)
ATGTGGCGTGGCTGCATCGCCAGCT
LOC_Os01g31210
OsAffx.23460.1.S1_at--996--531Chr01:17391949..17391973 (25 bp)
ATCGCCAGCTTCATGCGGATGGTGG
LOC_Os01g31210
OsAffx.23460.1.S1_at--536--9611Chr01:17391959..17391983 (25 bp)
TCATGCGGATGGTGGATACAGCGAA
LOC_Os01g31210
OsAffx.23460.1.S1_at--1160--3931Chr01:17392050..17392074 (25 bp)
CGGACTGCAGCGTGTCGAGGCCACT
LOC_Os01g31210
OsAffx.23460.1.S1_at--634--3831Chr01:17392109..17392133 (25 bp)
CTGCTACACGTTTGCCGTGCCGCGT
LOC_Os01g31210
OsAffx.23460.1.S1_at--165--2112Chr01:17392189..17392213 (25 bp)
ACATGCGCGCCTAGCCGTGGAGCTA
LOC_Os01g31210
OsAffx.23460.1.S1_at--113--6391Chr01:17392255..17392279 (25 bp)
GATCGCGCACCGCTTGCCTGAGCAG
LOC_Os01g31210
OsAffx.23460.1.S1_at--530--9231Chr01:17392302..17392326 (25 bp)
TCCTCCCTAGCCAGGGCGTTGGGTT
LOC_Os01g31210
Target Sequence 
GAACGAACTGTGAAAACCTACTGCTTTGCACGATGTCAGGATGTGGCGTGGCTGCATCGCCAGCTTCATGCGGATGGTGG
ATACAGCGAAGTGAAGCAACAGATAAAGGCCGGGAATCGGAGGGGAGCTTCCCGGCGCCGACGTTGGTGGACGACGCGGA
CTGCAGCGTGTCGAGGCCACTGGGAGTCAGCGCCGTCGCCGTGCTACACCTCCCCCTGCTACACGTTTGCCGTGCCGCGT
CCCGTACGGCCGTACCTCACCTCTTCCAGCTGAAACTCAACCCTGCCGCCCCTCCACATGCGCGCCTAGCCGTGGAGCTA
CGTCGACTCACCCCTCCCATGGCTTACCGTGTCGCCTCCCTGATCGCGCACCGCTTGCCTGAGCAGCAGTGCTGCCTCCG
CCGTCTGCTCCTCCCTAGCCAGGGCGTTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis