Browse Element(s) Details


OsAffx.23472.1.S1_at

Description tigr:9629.m03015
TID=OsAffx.23472.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3231011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32270OsAffx.11282.1.S1_at11/111+18018728..18020523hypothetical protein
LOC_Os01g32280Os.18538.1.S1_at11/111+18023993..18033217integral membrane family protein, putative, expressed
LOC_Os01g32300Os.4868.1.S1_at11/111+18035674..18040300expressed protein
LOC_Os01g32310OsAffx.23472.1.S1_at11/111+18041014..18041487hypothetical protein
LOC_Os01g32320OsAffx.19542.3.S1_x_at3/111+18057922..18061809retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23472.1.S1_at--306--10291Chr01:18041431..18041455 (25 bp)
TTTGCCTTCACTCACCTTCATCATC
LOC_Os01g32310
OsAffx.23472.1.S1_at--982--3931Chr01:18041397..18041419 (23 bp)
CGGCGTGCTCCCTGTCAATGAAGAG
LOC_Os01g32310
OsAffx.23472.1.S1_at--346--8371Chr01:18041397..18041418 (22 bp)
GGCGTGCTCCCTGTCAATGAAGAGG
LOC_Os01g32310
OsAffx.23472.1.S1_at--1073--4651Chr01:18041397..18041417 (21 bp)
GCGTGCTCCCTGTCAATGAAGAGGA
LOC_Os01g32310
OsAffx.23472.1.S1_at--807--7311Chr01:18041022..18041415 (25 bp)
GTGCTCCCTGTCAATGAAGAGGAGC
LOC_Os01g32310
OsAffx.23472.1.S1_at--696--1531Chr01:18041064..18041088 (25 bp)
AGCTCGCGGGCCAGGGGGTTTATCA
LOC_Os01g32310
OsAffx.23472.1.S1_at--243--7691Chr01:18041049..18041073 (25 bp)
GGGTTTATCAGCGTGGCAATCCTCA
LOC_Os01g32310
OsAffx.23472.1.S1_at--801--7871Chr01:18041048..18041072 (25 bp)
GGTTTATCAGCGTGGCAATCCTCAC
LOC_Os01g32310
OsAffx.23472.1.S1_at--660--6811Chr01:18041047..18041071 (25 bp)
GTTTATCAGCGTGGCAATCCTCACT
LOC_Os01g32310
OsAffx.23472.1.S1_at--70--10431Chr01:18041045..18041069 (25 bp)
TTATCAGCGTGGCAATCCTCACTGG
LOC_Os01g32310
OsAffx.23472.1.S1_at--644--10171Chr01:18041044..18041068 (25 bp)
TATCAGCGTGGCAATCCTCACTGGA
LOC_Os01g32310
Target Sequence 
TTTGCCTTCACTCACCTTCATCATCTCCCTCTCCTCCGGCGTGCTCCCTGTCAATGAAGAGGAGCGGGGTGAAGGAGACG
GCTGGAGCTCGCGGGCCAGGGGGTTTATCAGCGTGGCAATCCTCACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis