Browse Element(s) Details


OsAffx.23573.1.S1_s_at

Description tigr:9629.m03721
TID=OsAffx.23573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3912011/11RING zinc finger ankyrin protein, putative
LOC_Os10g3278011/11RING zinc finger ankyrin protein, putative
LOC_Os05g0213011/11ankyrin repeat family protein, putative, expressed
LOC_Os11g296003/11RING zinc finger protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39100OsAffx.2191.1.S1_at11/111+22300534..22307329Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g39110NANA1+22320771..22323418Zinc finger, C2H2 type family protein, expressed
LOC_Os01g39120OsAffx.23573.1.S1_s_at11/111+22331757..22332214RING zinc finger ankyrin protein, putative
LOC_Os01g39120Os.21180.2.S1_x_at7/111+22331757..22332214RING zinc finger ankyrin protein, putative
LOC_Os01g39134Os.40808.1.S1_x_at11/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39134Os.16183.1.S1_at10/111+22348696..22354116EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23573.1.S1_s_at--852--10733Chr10:16837387..16837411 (25 bp)
TTGAACCAGAAGCTAAGGCTCTCCT
LOC_Os10g32780
OsAffx.23573.1.S1_s_at--148--1733Chr10:16837391..16837415 (25 bp)
ACCAGAAGCTAAGGCTCTCCTGGAA
LOC_Os10g32780
OsAffx.23573.1.S1_s_at--304--8073Chr10:16837445..16837469 (25 bp)
GGAGAAGAAAATCCTGAATGGCACA
LOC_Os10g32780
OsAffx.23573.1.S1_s_at--678--4273Chr10:16837457..16837481 (25 bp)
CCTGAATGGCACAAAGTACTCCCTG
LOC_Os10g32780
OsAffx.23573.1.S1_s_at--265--5293Chr10:16837460..16837484 (25 bp)
GAATGGCACAAAGTACTCCCTGCCA
LOC_Os10g32780
OsAffx.23573.1.S1_s_at--667--853Chr10:16837462..16837486 (25 bp)
ATGGCACAAAGTACTCCCTGCCATC
LOC_Os10g32780
OsAffx.23573.1.S1_s_at--791--7753Chr10:16837497..16837521 (25 bp)
GGTGATGACAGTGCCGATGACGATG
LOC_Os10g32780
OsAffx.23573.1.S1_s_at--80--9174Chr10:16837508..16837532 (25 bp)
TGCCGATGACGATGCATGCTCAGAG
LOC_Os10g32780
OsAffx.23573.1.S1_s_at--739--4233Chr10:16837510..16837534 (25 bp)
CCGATGACGATGCATGCTCAGAGGT
LOC_Os10g32780
OsAffx.23573.1.S1_s_at--327--694Chr10:16837513..16837534 (22 bp)
ATGACGATGCATGCTCAGAGGTGAG
LOC_Os10g32780
OsAffx.23573.1.S1_s_at--702--6334Chr10:16837518..16837640 (25 bp)
GATGCATGCTCAGAGGTGAGCGACA
LOC_Os10g32780
Target Sequence 
TTGAACCAGAAGCTAAGGCTCTCCTGGAAGCAGCTCTGATGGAAGCCAACAGGGAGAGGGAGAAGAAAATCCTGAATGGC
ACAAAGTACTCCCTGCCATCCCCTTTGCCTGGTGATGACAGTGCCGATGACGATGCATGCTCAGAGGTGAGCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23573.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis