Browse Element(s) Details


Os.16183.1.S1_at

Description gb:AK105334.1
DB_XREF= gi:32990543
TID=Os.16183.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D10, full insert sequence.
FL= gb:AK105334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3913410/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39120OsAffx.23573.1.S1_s_at11/111+22331757..22332214RING zinc finger ankyrin protein, putative
LOC_Os01g39120Os.21180.2.S1_x_at7/111+22331757..22332214RING zinc finger ankyrin protein, putative
LOC_Os01g39134Os.40808.1.S1_x_at11/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39134Os.16183.1.S1_at10/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39150OsAffx.23574.1.S1_x_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39150OsAffx.23574.1.S1_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39160OsAffx.23575.1.S1_x_at11/111+22366437..22366952expressed protein
LOC_Os01g39170OsAffx.676.2.A1_at11/111+22367478..22368073hypothetical protein
LOC_Os01g39180OsAffx.23577.1.S1_s_at11/111+22369777..22372161hypothetical protein
LOC_Os01g39180Os.29932.2.S1_at1/111+22369777..22372161hypothetical protein
LOC_Os01g39190OsAffx.8958.1.S1_at11/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.8473.1.S1_x_at3/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.2.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.23574.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.25367.1.S1_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.3.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.675.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16183.1.S1_at--565--5211NONE
GAATTCCGCTGAGGTGTCTGCAGAT
NONE
Os.16183.1.S1_at--37--3231Chr01:22349189..22349213 (25 bp)
CAAGTATGGTTTGCGGATCGATCCA
LOC_Os01g39134
Os.16183.1.S1_at--406--6391Chr01:22349174..22349198 (25 bp)
GATCGATCCAAGATGCTTTCACCAT
LOC_Os01g39134
Os.16183.1.S1_at--38--5951Chr01:22349111..22349135 (25 bp)
GAGAACTTCAGCTGTTTGGTACCCT
LOC_Os01g39134
Os.16183.1.S1_at--530--8771Chr01:22349099..22349123 (25 bp)
TGTTTGGTACCCTAGAGTTCTTTCT
LOC_Os01g39134
Os.16183.1.S1_at--47--1231Chr01:22349084..22349108 (25 bp)
AGTTCTTTCTATCAGGTACTCAGGT
LOC_Os01g39134
Os.16183.1.S1_at--665--3471Chr01:22349064..22349088 (25 bp)
CAGGTGGAGCACCAAGCTGGCTAAT
LOC_Os01g39134
Os.16183.1.S1_at--1122--4511Chr01:22348985..22349009 (25 bp)
GCCGCTAACCTGACCTGACATATGT
LOC_Os01g39134
Os.16183.1.S1_at--580--8131Chr01:22348893..22348917 (25 bp)
GGACATGACCAGACCAGTGAGCTAA
LOC_Os01g39134
Os.16183.1.S1_at--105--691Chr01:22348802..22348826 (25 bp)
ATGACTGGATTGCTGATGGCGCTCC
LOC_Os01g39134
Os.16183.1.S1_at--84--1231Chr01:22348717..22348741 (25 bp)
AGTTGCGTCGATCACATGGAAATGC
LOC_Os01g39134
Target Sequence 
GAATTCCGCTGAGGTGTCTGCAGATTGTTGGTGTTGCAAGTATGGTTTGCGGATCGATCCAAGATGCTTTCACCATCAGA
CTGAATGATCTAGGAGCTGCTAACCACACAAAAAGAGAACTTCAGCTGTTTGGTACCCTAGAGTTCTTTCTATCAGGTAC
TCAGGTGGAGCACCAAGCTGGCTAATGCCAGCGATATTAGGTTACATACATGNCCAACTTNGCCTGNCCTTTATTTAGGN
TGAGCCGCTAACCTGACCTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATGCNAATGGATGGAGTCTAGGAGA
NCAATCATAGTAGAATGGACATGACCAGACCAGTGAGCTAATTGTGCCNTTTCTTCTTTCTTTTTTTCTGAAGTGTGAGC
TAAATTATNCCTTCCTTGTTGAAACATAATGACTGGATTGCTGATGGCGCTCCGACCGACAGTTTTCCTCGGCGCATGAG
TGCGTCGTGGACGTGGAATGATGGAATTATTGTAGTTGCGTCGATCACATGGAAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis