Browse Element(s) Details


OsAffx.23575.1.S1_x_at

Description tigr:9629.m03725
TID=OsAffx.23575.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3916011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39134Os.40808.1.S1_x_at11/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39134Os.16183.1.S1_at10/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39150OsAffx.23574.1.S1_x_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39150OsAffx.23574.1.S1_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39160OsAffx.23575.1.S1_x_at11/111+22366437..22366952expressed protein
LOC_Os01g39170OsAffx.676.2.A1_at11/111+22367478..22368073hypothetical protein
LOC_Os01g39180OsAffx.23577.1.S1_s_at11/111+22369777..22372161hypothetical protein
LOC_Os01g39180Os.29932.2.S1_at1/111+22369777..22372161hypothetical protein
LOC_Os01g39190OsAffx.8958.1.S1_at11/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.8473.1.S1_x_at3/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.2.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.23574.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.25367.1.S1_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.3.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.675.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39200NANA1+22380476..22385348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39210NANA1+22387929..22388258hypothetical protein
LOC_Os01g39220OsAffx.23571.1.S1_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39220OsAffx.23571.1.S1_x_at11/111+22391168..22391587LOB domain protein 22, putative

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Gene Ontology Classification
GO idTypeName
GO:0009799biological_processdetermination of symmetry
GO:0009954biological_processproximal/distal pattern formation
GO:0010199biological_processorgan boundary specification
GO:0048441biological_processpetal development
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23575.1.S1_x_at--872--2091Chr01:22366468..22366492 (25 bp)
ACATCTCGCCGGTCGCAGTGGCCGA
LOC_Os01g39160
OsAffx.23575.1.S1_x_at--898--1911Chr01:22366551..22366575 (25 bp)
ACGGGATGCCCGCTGGCGCGCTGCT
LOC_Os01g39160
OsAffx.23575.1.S1_x_at--1133--5111Chr01:22366602..22366626 (25 bp)
GACGGCCGGCTATTCCGGAACGCGT
LOC_Os01g39160
OsAffx.23575.1.S1_x_at--638--8271Chr01:22366609..22366633 (25 bp)
GGCTATTCCGGAACGCGTTCCGCCT
LOC_Os01g39160
OsAffx.23575.1.S1_x_at--839--10611Chr01:22366635..22366659 (25 bp)
TTCGGCGTCGGCAACGTCGTCGGCT
LOC_Os01g39160
OsAffx.23575.1.S1_x_at--711--2531Chr01:22366647..22366671 (25 bp)
AACGTCGTCGGCTTCCTGCTGGCGG
LOC_Os01g39160
OsAffx.23575.1.S1_x_at--120--5911Chr01:22366788..22366812 (25 bp)
GAGCTCGACTGCCTGAAGGCCGAAC
LOC_Os01g39160
OsAffx.23575.1.S1_x_at--253--9011Chr01:22366801..22366825 (25 bp)
TGAAGGCCGAACTCGCAACCGCGCA
LOC_Os01g39160
OsAffx.23575.1.S1_x_at--623--871Chr01:22366804..22366828 (25 bp)
AGGCCGAACTCGCAACCGCGCAGAG
LOC_Os01g39160
OsAffx.23575.1.S1_x_at--239--9391Chr01:22366885..22366909 (25 bp)
TCGATCGAGCTCGAGCCCTTAACTA
LOC_Os01g39160
OsAffx.23575.1.S1_x_at--183--1671Chr01:22366898..22366922 (25 bp)
AGCCCTTAACTACTTCTGCCATGGA
LOC_Os01g39160
Target Sequence 
ACATCTCGCCGGTCGCAGTGGCCGACGACGACGACCCACCGGCGGCGTGCGCCGCGTGCGCCCACCTGGGGCGCGCGTGC
CCGACGGGATGCCCGCTGGCGCGCTGCTTCCCGGCGGCCGGGGACCAGCCAGCGGACGGCCGGCTATTCCGGAACGCGTT
CCGCCTCTTCGGCGTCGGCAACGTCGTCGGCTTCCTGCTGGCGGCCGGCGGGGACCCGGGGAAACGGCGCGACGCCGCGG
TGTCCGTCGCCTACGAGGCCGACGCGCGGGCCGACGACCCCGTGCGCGGCGCCCACGGCGTGGTGATGGACCTCGAGCGG
GAGCTCGACTGCCTGAAGGCCGAACTCGCAACCGCGCAGAGCGCGCTCGCGCGGCACCGCCAATACGCCCAGCCGCCGCC
GCCGCCACCCGACGCACTCGATCGAGCTCGAGCCCTTAACTACTTCTGCCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23575.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis