Browse Element(s) Details


OsAffx.676.2.A1_at

Description tigr:9629.m03726
TID=OsAffx.676.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3917011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39134Os.40808.1.S1_x_at11/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39134Os.16183.1.S1_at10/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39150OsAffx.23574.1.S1_x_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39150OsAffx.23574.1.S1_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39160OsAffx.23575.1.S1_x_at11/111+22366437..22366952expressed protein
LOC_Os01g39170OsAffx.676.2.A1_at11/111+22367478..22368073hypothetical protein
LOC_Os01g39180OsAffx.23577.1.S1_s_at11/111+22369777..22372161hypothetical protein
LOC_Os01g39180Os.29932.2.S1_at1/111+22369777..22372161hypothetical protein
LOC_Os01g39190OsAffx.8958.1.S1_at11/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.8473.1.S1_x_at3/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.2.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.23574.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.25367.1.S1_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.3.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.675.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39200NANA1+22380476..22385348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39210NANA1+22387929..22388258hypothetical protein
LOC_Os01g39220OsAffx.23571.1.S1_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39220OsAffx.23571.1.S1_x_at11/111+22391168..22391587LOB domain protein 22, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.676.2.A1_at--348--971Chr01:22367529..22367553 (25 bp)
AGGAGCCGTGGTGGTCATGTGGCGC
LOC_Os01g39170
OsAffx.676.2.A1_at--648--3491Chr01:22367544..22367930 (25 bp)
CATGTGGCGCCGGTGAAAGCCTTGC
LOC_Os01g39170
OsAffx.676.2.A1_at--137--2351Chr01:22367921..22367945 (25 bp)
AAAGCCTTGCCCCAGTTTCCAGGTG
LOC_Os01g39170
OsAffx.676.2.A1_at--938--4511Chr01:22367929..22367953 (25 bp)
GCCCCAGTTTCCAGGTGAACGGCAG
LOC_Os01g39170
OsAffx.676.2.A1_at--16--6851Chr01:22367935..22367959 (25 bp)
GTTTCCAGGTGAACGGCAGCGACGA
LOC_Os01g39170
OsAffx.676.2.A1_at--875--6551Chr01:22367958..22367982 (25 bp)
GATTCACGTCGCGTCCCTGCTGTGG
LOC_Os01g39170
OsAffx.676.2.A1_at--197--4291Chr01:22367973..22367997 (25 bp)
CCTGCTGTGGGTACCGTTTGGAGAA
LOC_Os01g39170
OsAffx.676.2.A1_at--345--4711Chr01:22367976..22368000 (25 bp)
GCTGTGGGTACCGTTTGGAGAACCT
LOC_Os01g39170
OsAffx.676.2.A1_at--168--1451Chr01:22367994..22368018 (25 bp)
AGAACCTTTTCATGCGCATCTCTGG
LOC_Os01g39170
OsAffx.676.2.A1_at--508--10331Chr01:22368001..22368025 (25 bp)
TTTCATGCGCATCTCTGGTCGTGGA
LOC_Os01g39170
OsAffx.676.2.A1_at--612--451Chr01:22368011..22368035 (25 bp)
ATCTCTGGTCGTGGAGTTGGCGTTA
LOC_Os01g39170
Target Sequence 
AGGAGCCGTGGTGGTCATGTGGCGCCGGTGAAAGCCTTGCCCCAGTTTCCAGGTGAACGGCAGCGACGATTCACGTCGCG
TCCCTGCTGTGGGTACCGTTTGGAGAACCTTTTCATGCGCATCTCTGGTCGTGGAGTTGGCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.676.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis