Browse Element(s) Details


OsAffx.23574.1.S1_at

Description tigr:9629.m03724
TID=OsAffx.23574.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3915011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39134Os.40808.1.S1_x_at11/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39134Os.16183.1.S1_at10/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39150OsAffx.23574.1.S1_x_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39150OsAffx.23574.1.S1_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39160OsAffx.23575.1.S1_x_at11/111+22366437..22366952expressed protein
LOC_Os01g39170OsAffx.676.2.A1_at11/111+22367478..22368073hypothetical protein
LOC_Os01g39180OsAffx.23577.1.S1_s_at11/111+22369777..22372161hypothetical protein
LOC_Os01g39180Os.29932.2.S1_at1/111+22369777..22372161hypothetical protein
LOC_Os01g39190OsAffx.8958.1.S1_at11/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.8473.1.S1_x_at3/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.2.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.23574.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.25367.1.S1_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.3.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.675.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39200NANA1+22380476..22385348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39210NANA1+22387929..22388258hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23574.1.S1_at--202--4131Chr01:22363891..22363915 (25 bp)
CGCACCGCCTGTTCGGCATCAAGAA
LOC_Os01g39150
OsAffx.23574.1.S1_at--762--4211Chr01:22363895..22363919 (25 bp)
CCGCCTGTTCGGCATCAAGAACATC
LOC_Os01g39150
OsAffx.23574.1.S1_at--324--1431Chr01:22363912..22363936 (25 bp)
AGAACATCCTCAGGGTCATGGCCTC
LOC_Os01g39150
OsAffx.23574.1.S1_at--213--571Chr01:22363917..22363941 (25 bp)
ATCCTCAGGGTCATGGCCTCGGCGT
LOC_Os01g39150
OsAffx.23574.1.S1_at--281--1871Chr01:22363957..22363981 (25 bp)
ACGACGCCATGAAGTCGGTCGTCTA
LOC_Os01g39150
OsAffx.23574.1.S1_at--198--9431Chr01:22363971..22363995 (25 bp)
TCGGTCGTCTACGAGTCCGACGCGT
LOC_Os01g39150
OsAffx.23574.1.S1_at--603--9531Chr01:22363978..22364002 (25 bp)
TCTACGAGTCCGACGCGTGGGTGAT
LOC_Os01g39150
OsAffx.23574.1.S1_at--563--6091Chr01:22363983..22364007 (25 bp)
GAGTCCGACGCGTGGGTGATCGACC
LOC_Os01g39150
OsAffx.23574.1.S1_at--126--5911Chr01:22364049..22364073 (25 bp)
GAGCTCGCCCGCTTGAAGGCCGAGC
LOC_Os01g39150
OsAffx.23574.1.S1_at--901--4031Chr01:22364291..22364315 (25 bp)
CGTTGATCCACCCGCCGTAGATGCT
LOC_Os01g39150
OsAffx.23574.1.S1_at--273--7631Chr01:22364350..22364374 (25 bp)
GGGACGGACATGCGCCTCCTGCCAA
LOC_Os01g39150
Target Sequence 
CGCACCGCCTGTTCGGCATCAAGAACATCCTCAGGGTCATGGCCTCGGCGTCGGAGGAGCTGCGCGACGACGCCATGAAG
TCGGTCGTCTACGAGTCCGACGCGTGGGTGATCGACCCCCTCGGCGGCGCCGCCGGCATCGTCAAGGGCCTCAGCCAGGA
GCTCGCCCGCTTGAAGGCCGAGCTCGACGCGGTGAAGGGGCTGATCGAGCTCCATCGCCGTGCCGCGGCCCAGCAGCAAC
AGCAGCCGCCCGTCGCCGTCGCCTCCAATGGGGGCTTCCTCCCCTCGCCGCCGCCACCGCCACAGGGGCAGCAGCAGCTG
CTGTTTCTGCCGCCGCCACCGCCGACGATGATGCTACAAGATGGCCACTGCGACGACGAGACGGTTGAAGATGATTACCT
CGTTGATCCACCCGCCGTAGATGCTGCTGCGGCGACGTCGACGGCGCCGGAACGCCATGGGGACGGACATGCGCCTCCTG
CCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis