Browse Element(s) Details


Os.29932.2.S1_at

Description gb:AK108008.1
DB_XREF= gi:32993217
TID=Os.29932.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0681B11.18 (P0681B11.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-H01, full insert sequence.
FL= gb:AK108008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g391801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39134Os.40808.1.S1_x_at11/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39134Os.16183.1.S1_at10/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39150OsAffx.23574.1.S1_x_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39150OsAffx.23574.1.S1_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39160OsAffx.23575.1.S1_x_at11/111+22366437..22366952expressed protein
LOC_Os01g39170OsAffx.676.2.A1_at11/111+22367478..22368073hypothetical protein
LOC_Os01g39180OsAffx.23577.1.S1_s_at11/111+22369777..22372161hypothetical protein
LOC_Os01g39180Os.29932.2.S1_at1/111+22369777..22372161hypothetical protein
LOC_Os01g39190OsAffx.8958.1.S1_at11/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.8473.1.S1_x_at3/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.2.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.23574.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.25367.1.S1_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.3.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.675.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39200NANA1+22380476..22385348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39210NANA1+22387929..22388258hypothetical protein
LOC_Os01g39220OsAffx.23571.1.S1_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39220OsAffx.23571.1.S1_x_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39230NANA1+22394645..22395088hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29932.2.S1_at--268--7211Chr01:24140249..24140273 (25 bp)
GTCGTCTGTGGTGGCACAGCCGCGC
NONE
Os.29932.2.S1_at--730--6011Chr01:24140172..24140196 (25 bp)
GAGAGATGTGGTGGCTCAGCACCAC
NONE
Os.29932.2.S1_at--513--2871Chr01:24140034..24140058 (25 bp)
AAGGGCAATTAAGTCATTTGGCGCA
NONE
Os.29932.2.S1_at--1124--3111Chr01:24140028..24140052 (25 bp)
AATTAAGTCATTTGGCGCAGCCGTT
NONE
Os.29932.2.S1_at--940--1151Chr01:24140023..24140047 (25 bp)
AGTCATTTGGCGCAGCCGTTATCCA
NONE
Os.29932.2.S1_at--1078--5051Chr01:24140012..24140036 (25 bp)
GCAGCCGTTATCCACCGTTAGGATA
NONE
Os.29932.2.S1_at--1040--9811Chr01:24139989..24140013 (25 bp)
TAAAAACGGACGGAATGATGCGGAG
NONE
Os.29932.2.S1_at--69--2451Chr01:24139956..24139980 (25 bp)
AAAATTCGACGATGTCACAGAGGGA
NONE
Os.29932.2.S1_at--487--10631Chr01:24139952..24139976 (25 bp)
TTCGACGATGTCACAGAGGGAGGCT
NONE
Os.29932.2.S1_at--260--8257Chr12:8339656..8339679 (24 bp)
GGCACAGAGGCAGACACCATCTTTT
NONE
Os.29932.2.S1_at--687--3313Chr04:24074133..24074157 (25 bp)
CACAGAGGCAGACACCATCTTTTTT
NONE
Target Sequence 
GTCGTCTGTGGTGGCACAGCCGCGCACTAACGCCGGCCACCGGTGGCGGCGGCACAAGGCCGACGCGGCGAGGATGCGAG
AGATGTGGTGGCTCAGCACCACGGCCGCCGTTGTCACCCTTCGCCTCGCCGACCGCAGCGGCATCGCCGGCGACTCCCCT
CCCGCTTCTTTGCTGCTGCTGCATTTGAGGGAGAGAGGAGAGTGCTAGGAGGCCTAAGGGCAATTAAGTCATTTGGCGCA
GCCGTTATCCACCGTTAGGATAAAAACGGACGGAATGATGCGGAGGGCGCGATAAAATTCGACGATGTCACAGAGGGAGG
CTCGAACTTTTTAGTGGCACAGAGGCAGACACCATCTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29932.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis