Browse Element(s) Details


OsAffx.23616.2.S1_at

Description tigr:9636.m03467
TID=OsAffx.23616.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3456011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34540NANA8+21546223..21548904transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34550Os.49274.1.S1_at11/118+21567415..21569582Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g34560OsAffx.23616.2.S1_at11/118+21573616..21574363hypothetical protein
LOC_Os08g34570OsAffx.6021.1.S1_at10/118+21575758..21576557D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein
LOC_Os08g34580Os.6139.2.S1_s_at11/118+21589425..21593268trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g34580Os.6139.1.S1_at11/118+21589425..21593268trehalose-6-phosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23616.2.S1_at--187--9691Chr08:21573683..21573707 (25 bp)
TCACGCACGCTGACCAGGCGAGCTT
LOC_Os08g34560
OsAffx.23616.2.S1_at--1059--3731Chr08:21573692..21573716 (25 bp)
CTGACCAGGCGAGCTTCGGGTTCCG
LOC_Os08g34560
OsAffx.23616.2.S1_at--17--2911Chr08:21573754..21573778 (25 bp)
AAGGTCGCTGCCTACCTCTTCACAG
LOC_Os08g34560
OsAffx.23616.2.S1_at--770--1751Chr08:21573767..21573791 (25 bp)
ACCTCTTCACAGTGCTCGTCATCGA
LOC_Os08g34560
OsAffx.23616.2.S1_at--535--1131Chr08:21573777..21573922 (25 bp)
AGTGCTCGTCATCGAGCCGACAAAG
LOC_Os08g34560
OsAffx.23616.2.S1_at--241--7131Chr08:21573784..21573929 (25 bp)
GTCATCGAGCCGACAAAGCCGCTGG
LOC_Os08g34560
OsAffx.23616.2.S1_at--847--4791Chr08:21574162..21574186 (25 bp)
GCTCGCTGTGCCGTTGACTCTCTGT
LOC_Os08g34560
OsAffx.23616.2.S1_at--954--9171Chr08:21574170..21574194 (25 bp)
TGCCGTTGACTCTCTGTCGTGCCTG
LOC_Os08g34560
OsAffx.23616.2.S1_at--1138--3311Chr08:21574278..21574302 (25 bp)
CACATTGGCTCCACCAGTTTTTATT
LOC_Os08g34560
OsAffx.23616.2.S1_at--673--10871Chr08:21574282..21574306 (25 bp)
TTGGCTCCACCAGTTTTTATTAATT
LOC_Os08g34560
OsAffx.23616.2.S1_at--681--4771Chr08:21574285..21574309 (25 bp)
GCTCCACCAGTTTTTATTAATTTGT
LOC_Os08g34560
Target Sequence 
TCACGCACGCTGACCAGGCGAGCTTCGGGTTCCGCTCCGTCGCCTTCCTCCTCGCGCATAGCCACGCCCACAAGGTCGCT
GCCTACCTCTTCACAGTGCTCGTCATCGAGCCGACAAAGCCGCTGGCGTGTGACCCGGCGAGCTTGCCCAAGCTCCCGCT
GAGCAAGGAGTACAACGCCAAGCTCCGCGGTAAGGAGGCCATCAGGCAAAACACGACAGCCATCGGAGGCAAGGGCTCCA
TGTTCATCAAACCGGGGAGGAACAAGCCGTCGAAGGCGGCGCCAGCACAGGACGCCATTGGAGGAGGAGCTCACCGGCGC
GCGCCTGGTGCACCCGAAGAGCGCGAGCCACCACTACAGCTCGCTGTGCCGTTGACTCTCTGTCGTGCCTGGAGAGAGGA
GAGAGAGATGAAGAAAGGGGAGATGGCGGAGAGGAGGAGGAAGAAGAAGAGGGGTGAAAATGACATGTGGGGCCCACATT
GGCTCCACCAGTTTTTATTAATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23616.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis